Click here to switch to the map view.

The map label for this gene is yicM [C]

Identifier: 145296995

GI number: 145296995

Start: 3210252

End: 3211430

Strand: Direct

Name: yicM [C]

Synonym: cgR_2894

Alternate gene names: 145296995

Gene position: 3210252-3211430 (Clockwise)

Preceding gene: 145296994

Following gene: 145296996

Centisome position: 96.86

GC content: 54.79

Gene sequence:

>1179_bases
ATGAGCACCACCACCGCGCCCGAAGCACGGTTTCCTGTCGTCCCTTTGACCGCCATGAGTTTCGCGGCATTTGTTTATGT
CACGTTCGAGATGTTTGCAGTTGGCCTCATCAAGCCGATGGCCAGCGATCTTGGAGTGTCAGAATCCAGCATCGGTCTGT
TGATGACTGTGTATGCGACTGTCGTTGCCGTGGTGACGATCCCTGCCATGTTGTGGGTTTCTCGATTTAACAAGCGCACA
GTTTTCCTGATTACTCTGGCATTTTTGGCCACGGGCATTGTTGTTCAGGCACTGACCGTTAATTATGGAATGCTAGCCAT
CGGCCGCACTATCGCAGCATTGACTCACGGGGTGTTTTGGGCACTTGTTGGGCCAATGGCAGCGCGTATGTCCCCAGGTC
ACACTGGTCGTGCAGTAGGCGTTGTGTCGATTGGATCAACCATGGCGCTGGTCGTTGGTTCTCCGCTGGCAACATGGATC
GGTGAACTCATCGGATGGCGTCCTGCCACCTGGATTCTCGGTGCGCTGACCATTGCGGCCGTGGCTGTACTCATTCCAAC
CGTTCCATCACTGCCACCACTTCCAGACACGGAATCAGAGTCCAAAGAAAAGAAATCCCTTCCATGGGGTCTCATTTCCC
TGGTCATTTTCCTTCTCCTTGCCGTCACCGGTGTTTTTGCTGCCTACACCTACCTTGGCCTCATCATCGCTGAAACAGCA
GGGGACAGCTTCGTGTCCATTGGCTTGTTCGCCTTCGGTGCACTCGGACTCATTGGCGTGACAGTGGCAACCCGAACTGT
GGATCAACGCATGCTGCGTGGAAGTGTTCACACCACCACTTTGTTTGTCATTGCTGCAATTCTCGGACAGATCGCATTCG
GATTAGAGGGCACACTAGCCGTAGTAGCTATCTTCCTTGCAGTCACCGTGTTTGGTGGAGCATACGGCGCTCTCCCAACC
CTGGGAACCACCATCTTCCTCCATGCGGGTCGCGACCACCCAGATACTGCATCCTCCATTTATGTGGTCACTTATCAAGT
GGGTATCGCGTCTGGCGCGGCTCTTGGCGCGATGGCTGTGGATGCCGATTGGGTTGCTGGCACTTTGTGGATCATGGCTG
GACTGTCATTGGCTTCCACGTTGGTCTTGGCGCTGTGGTCCCGCCCGCTACTGAAGTAG

Upstream 100 bases:

>100_bases
ATCTGAGCAAGTTCAGTAGAGCACGTTCACCCGAACAGATTCACTCGAGAAGTCGACAGACCCCCATTAAACAGCCCGAT
TCAAGAAAGGCTTCGCTGCC

Downstream 100 bases:

>100_bases
CAGCCCAAATTCAGCCCACTGAATCAACCACTGAACCAACCCCAAAACCACCCAAAAGTCACACTTAGCAAACAATTAAA
TTCATCACAAAACACCCCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MSTTTAPEARFPVVPLTAMSFAAFVYVTFEMFAVGLIKPMASDLGVSESSIGLLMTVYATVVAVVTIPAMLWVSRFNKRT
VFLITLAFLATGIVVQALTVNYGMLAIGRTIAALTHGVFWALVGPMAARMSPGHTGRAVGVVSIGSTMALVVGSPLATWI
GELIGWRPATWILGALTIAAVAVLIPTVPSLPPLPDTESESKEKKSLPWGLISLVIFLLLAVTGVFAAYTYLGLIIAETA
GDSFVSIGLFAFGALGLIGVTVATRTVDQRMLRGSVHTTTLFVIAAILGQIAFGLEGTLAVVAIFLAVTVFGGAYGALPT
LGTTIFLHAGRDHPDTASSIYVVTYQVGIASGAALGAMAVDADWVAGTLWIMAGLSLASTLVLALWSRPLLK

Sequences:

>Translated_392_residues
MSTTTAPEARFPVVPLTAMSFAAFVYVTFEMFAVGLIKPMASDLGVSESSIGLLMTVYATVVAVVTIPAMLWVSRFNKRT
VFLITLAFLATGIVVQALTVNYGMLAIGRTIAALTHGVFWALVGPMAARMSPGHTGRAVGVVSIGSTMALVVGSPLATWI
GELIGWRPATWILGALTIAAVAVLIPTVPSLPPLPDTESESKEKKSLPWGLISLVIFLLLAVTGVFAAYTYLGLIIAETA
GDSFVSIGLFAFGALGLIGVTVATRTVDQRMLRGSVHTTTLFVIAAILGQIAFGLEGTLAVVAIFLAVTVFGGAYGALPT
LGTTIFLHAGRDHPDTASSIYVVTYQVGIASGAALGAMAVDADWVAGTLWIMAGLSLASTLVLALWSRPLLK
>Mature_391_residues
STTTAPEARFPVVPLTAMSFAAFVYVTFEMFAVGLIKPMASDLGVSESSIGLLMTVYATVVAVVTIPAMLWVSRFNKRTV
FLITLAFLATGIVVQALTVNYGMLAIGRTIAALTHGVFWALVGPMAARMSPGHTGRAVGVVSIGSTMALVVGSPLATWIG
ELIGWRPATWILGALTIAAVAVLIPTVPSLPPLPDTESESKEKKSLPWGLISLVIFLLLAVTGVFAAYTYLGLIIAETAG
DSFVSIGLFAFGALGLIGVTVATRTVDQRMLRGSVHTTTLFVIAAILGQIAFGLEGTLAVVAIFLAVTVFGGAYGALPTL
GTTIFLHAGRDHPDTASSIYVVTYQVGIASGAALGAMAVDADWVAGTLWIMAGLSLASTLVLALWSRPLLK

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI145693198, Length=347, Percent_Identity=25.0720461095101, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787808, Length=247, Percent_Identity=29.1497975708502, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787947, Length=154, Percent_Identity=34.4155844155844, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786595, Length=204, Percent_Identity=25.9803921568627, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40774; Mature: 40643

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTTTAPEARFPVVPLTAMSFAAFVYVTFEMFAVGLIKPMASDLGVSESSIGLLMTVYAT
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
VVAVVTIPAMLWVSRFNKRTVFLITLAFLATGIVVQALTVNYGMLAIGRTIAALTHGVFW
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
ALVGPMAARMSPGHTGRAVGVVSIGSTMALVVGSPLATWIGELIGWRPATWILGALTIAA
HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHH
VAVLIPTVPSLPPLPDTESESKEKKSLPWGLISLVIFLLLAVTGVFAAYTYLGLIIAETA
HHHHHCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GDSFVSIGLFAFGALGLIGVTVATRTVDQRMLRGSVHTTTLFVIAAILGQIAFGLEGTLA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHH
VVAIFLAVTVFGGAYGALPTLGTTIFLHAGRDHPDTASSIYVVTYQVGIASGAALGAMAV
HHHHHHHHHHHCCCCCCHHHHCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHC
DADWVAGTLWIMAGLSLASTLVLALWSRPLLK
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
STTTAPEARFPVVPLTAMSFAAFVYVTFEMFAVGLIKPMASDLGVSESSIGLLMTVYAT
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
VVAVVTIPAMLWVSRFNKRTVFLITLAFLATGIVVQALTVNYGMLAIGRTIAALTHGVFW
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
ALVGPMAARMSPGHTGRAVGVVSIGSTMALVVGSPLATWIGELIGWRPATWILGALTIAA
HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHH
VAVLIPTVPSLPPLPDTESESKEKKSLPWGLISLVIFLLLAVTGVFAAYTYLGLIIAETA
HHHHHCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GDSFVSIGLFAFGALGLIGVTVATRTVDQRMLRGSVHTTTLFVIAAILGQIAFGLEGTLA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHH
VVAIFLAVTVFGGAYGALPTLGTTIFLHAGRDHPDTASSIYVVTYQVGIASGAALGAMAV
HHHHHHHHHHHCCCCCCHHHHCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHC
DADWVAGTLWIMAGLSLASTLVLALWSRPLLK
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]