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The map label for this gene is scoB [H]

Identifier: 145296356

GI number: 145296356

Start: 2502212

End: 2502847

Strand: Reverse

Name: scoB [H]

Synonym: cgR_2271

Alternate gene names: 145296356

Gene position: 2502847-2502212 (Counterclockwise)

Preceding gene: 145296357

Following gene: 145296354

Centisome position: 75.52

GC content: 56.29

Gene sequence:

>636_bases
ATGACTTGGGATCATAACCAAATGGCAGCCCGCGTTGCCCAGGAACTTGAAGACGGCCAGTACGTCAACCTCGGCATCGG
AATGCCGACACTTATCCCCGGCTACCTGCCTGAGGGACTAGAGGTTATCCTTCACTCCGAAAACGGTGTGCTGGGCGTTG
GACCTTACCCAACTGAAGAGGAACTTGATCCTGAGCTGATCAACGCCGGCAAGGAAACCATCACGGTCGCACCTGGCGCA
TCCTACTTCTCCTCTTCTGATTCTTTCGCCATGATCCGCTCCAAGTCTGTCGACGTTGCAGTCTTGGGCGTTATGGAAGT
CTCCCAGTACGGCGACCTGGCCAACTGGATGATTCCCGGCAAGCTGGTCAAGGGTATGGGTGGCGCAATGGACCTGGTGC
ACGGCGCATCCAAGATCATCGCCATGACCGATCACATCACCAAGAAGGGCGCTCCGAAGATCCTTAAGGAGTGTCGCCTC
CCACTGACTGGCGCGAAGTGCGTGGACATGATTGTCACCACCCACGCTGTGTTCTCTGTGGACCCTGAAGAAGGCCTCAC
GCTCATCGAGTGCGCCGACGGTGTCACCGTTGAGGAACTCCGCGAAATCACCGAAGCCGATTTCAAAGTTGCTTAA

Upstream 100 bases:

>100_bases
TCCACCCAGATGAGATCGATCTGCCAGGAATTTACGTCAACCGCGTCGTCCACGTTGGACCGCAGGAAACCGGAATCGAA
AACAGGACGGTGTCTAACTA

Downstream 100 bases:

>100_bases
GCAAACGCTGCGCAATTAAGGCGTGCGACGCCTCGTCTGGGTGCAAATTATCCAGCAACGGCGCATCGCCTTCTTGATAA
AGGCTCGCACCATCGACGTA

Product: hypothetical protein

Products: NA

Alternate protein names: OXCT B; Succinyl CoA:3-oxoacid CoA-transferase [H]

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MTWDHNQMAARVAQELEDGQYVNLGIGMPTLIPGYLPEGLEVILHSENGVLGVGPYPTEEELDPELINAGKETITVAPGA
SYFSSSDSFAMIRSKSVDVAVLGVMEVSQYGDLANWMIPGKLVKGMGGAMDLVHGASKIIAMTDHITKKGAPKILKECRL
PLTGAKCVDMIVTTHAVFSVDPEEGLTLIECADGVTVEELREITEADFKVA

Sequences:

>Translated_211_residues
MTWDHNQMAARVAQELEDGQYVNLGIGMPTLIPGYLPEGLEVILHSENGVLGVGPYPTEEELDPELINAGKETITVAPGA
SYFSSSDSFAMIRSKSVDVAVLGVMEVSQYGDLANWMIPGKLVKGMGGAMDLVHGASKIIAMTDHITKKGAPKILKECRL
PLTGAKCVDMIVTTHAVFSVDPEEGLTLIECADGVTVEELREITEADFKVA
>Mature_210_residues
TWDHNQMAARVAQELEDGQYVNLGIGMPTLIPGYLPEGLEVILHSENGVLGVGPYPTEEELDPELINAGKETITVAPGAS
YFSSSDSFAMIRSKSVDVAVLGVMEVSQYGDLANWMIPGKLVKGMGGAMDLVHGASKIIAMTDHITKKGAPKILKECRLP
LTGAKCVDMIVTTHAVFSVDPEEGLTLIECADGVTVEELREITEADFKVA

Specific function: SHORT-CHAIN FATTY ACIDS METABOLISM. [C]

COG id: COG2057

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 3-oxoacid CoA-transferase subunit B family [H]

Homologues:

Organism=Homo sapiens, GI4557817, Length=208, Percent_Identity=55.7692307692308, Blast_Score=242, Evalue=2e-64,
Organism=Homo sapiens, GI11545841, Length=208, Percent_Identity=51.9230769230769, Blast_Score=231, Evalue=3e-61,
Organism=Escherichia coli, GI1788552, Length=207, Percent_Identity=50.2415458937198, Blast_Score=199, Evalue=8e-53,
Organism=Caenorhabditis elegans, GI17531517, Length=205, Percent_Identity=54.6341463414634, Blast_Score=234, Evalue=3e-62,
Organism=Drosophila melanogaster, GI21358325, Length=208, Percent_Identity=58.1730769230769, Blast_Score=252, Evalue=1e-67,
Organism=Drosophila melanogaster, GI24655794, Length=208, Percent_Identity=58.1730769230769, Blast_Score=251, Evalue=2e-67,

Paralogues:

None

Copy number: 369 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012791
- InterPro:   IPR004165
- InterPro:   IPR004164 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: =2.8.3.5 [H]

Molecular weight: Translated: 22589; Mature: 22458

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: PS01274 COA_TRANSF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWDHNQMAARVAQELEDGQYVNLGIGMPTLIPGYLPEGLEVILHSENGVLGVGPYPTEE
CCCCHHHHHHHHHHHHCCCCEEEECCCCHHHCCCCCCCCEEEEEECCCCEEECCCCCCCC
ELDPELINAGKETITVAPGASYFSSSDSFAMIRSKSVDVAVLGVMEVSQYGDLANWMIPG
CCCHHHHHCCCCEEEECCCCHHHCCCCCEEEEECCCCCEEEEEHHHHHHHCCHHHHCCCH
KLVKGMGGAMDLVHGASKIIAMTDHITKKGAPKILKECRLPLTGAKCVDMIVTTHAVFSV
HHHHCCCHHHHHHHCCHHEEEHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHEEEE
DPEEGLTLIECADGVTVEELREITEADFKVA
CHHHCCEEEEECCCCCHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TWDHNQMAARVAQELEDGQYVNLGIGMPTLIPGYLPEGLEVILHSENGVLGVGPYPTEE
CCCHHHHHHHHHHHHCCCCEEEECCCCHHHCCCCCCCCEEEEEECCCCEEECCCCCCCC
ELDPELINAGKETITVAPGASYFSSSDSFAMIRSKSVDVAVLGVMEVSQYGDLANWMIPG
CCCHHHHHCCCCEEEECCCCHHHCCCCCEEEEECCCCCEEEEEHHHHHHHCCHHHHCCCH
KLVKGMGGAMDLVHGASKIIAMTDHITKKGAPKILKECRLPLTGAKCVDMIVTTHAVFSV
HHHHCCCHHHHHHHCCHHEEEHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHEEEE
DPEEGLTLIECADGVTVEELREITEADFKVA
CHHHCCEEEEECCCCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]