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The map label for this gene is ideR [H]

Identifier: 145294200

GI number: 145294200

Start: 173112

End: 173810

Strand: Reverse

Name: ideR [H]

Synonym: cgR_0157

Alternate gene names: 145294200

Gene position: 173810-173112 (Counterclockwise)

Preceding gene: 145294201

Following gene: 145294199

Centisome position: 5.24

GC content: 62.95

Gene sequence:

>699_bases
ATGGACCTGAGTGAGATCACGCCGGTAGCCCAGGACTACCTCAAGGTGATCTGGGCGGCCACCGAGTGGGGAGGCCCACC
CATCACCGCCACGGCCTTGGCGGCACGGATGGGCACGACCACGCCCAACGTCTCGGATACGGTCAAGCGGCTGGCGGCCC
AGGGACTGGTGGAGTATCAACCTTACAAACCGGTCATGCTTACCGAGCGGGGCGAGAAGTACGCCATCGCGATGGTACGT
AGGCACCGACTGCTCGAGACCTTCCTCGCCACCACCCTGGGCTACCCGTGGGAGGAGGTCCACGACGAGGCCGAACGGCT
CGAACACGCCGCCTCAGAAACCATGATCGAGCGTATCGACGCTCTCCTCGGAAACCCCGCCACCGATCCACACGGCGACC
CCATCCCCACCGCTACCGGGCATATCTCCCGCTCCATCGATGCCATCCGGCTCACCCACGTTGTTCCGGGTGACTACGTA
ATCATCCGCATCTCTGATGCTGACTCAAGCCAGTTAGCCGGCTTTAGGAGGCAGGAAATAGTTCCGGGCGCCATAGTGAA
CGTCGCTGGCGCGGACCCACGCCAAGACAGAGTTCTCCTCAAAGGCGCTGATGGGAAAGAGGTCATCCTCACCACGGAGC
AAGCCAATGCCATTTGGGTAGCGCCCTCCCCCGGCCTCCGGGGCAGCACTTCCTTGTAG

Upstream 100 bases:

>100_bases
GGGTGGTGGTCGCGTTGATTGTGTCGCTGAATCTCGCCTTGATCGGACTGCTGGTCACCGGTCGGGGCTGACCGGCTGTG
GTCTTCGGTAGCGTGAGTCC

Downstream 100 bases:

>100_bases
CTGGTAGGGGGGGGATATCGGCCGCACCACTCTTTGCATCTAGCGTGATTGTTTTCTGAAGTCCTGCGCCCAAGGCGCCC
GTTTGCGATGCGTGACGTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MDLSEITPVAQDYLKVIWAATEWGGPPITATALAARMGTTTPNVSDTVKRLAAQGLVEYQPYKPVMLTERGEKYAIAMVR
RHRLLETFLATTLGYPWEEVHDEAERLEHAASETMIERIDALLGNPATDPHGDPIPTATGHISRSIDAIRLTHVVPGDYV
IIRISDADSSQLAGFRRQEIVPGAIVNVAGADPRQDRVLLKGADGKEVILTTEQANAIWVAPSPGLRGSTSL

Sequences:

>Translated_232_residues
MDLSEITPVAQDYLKVIWAATEWGGPPITATALAARMGTTTPNVSDTVKRLAAQGLVEYQPYKPVMLTERGEKYAIAMVR
RHRLLETFLATTLGYPWEEVHDEAERLEHAASETMIERIDALLGNPATDPHGDPIPTATGHISRSIDAIRLTHVVPGDYV
IIRISDADSSQLAGFRRQEIVPGAIVNVAGADPRQDRVLLKGADGKEVILTTEQANAIWVAPSPGLRGSTSL
>Mature_232_residues
MDLSEITPVAQDYLKVIWAATEWGGPPITATALAARMGTTTPNVSDTVKRLAAQGLVEYQPYKPVMLTERGEKYAIAMVR
RHRLLETFLATTLGYPWEEVHDEAERLEHAASETMIERIDALLGNPATDPHGDPIPTATGHISRSIDAIRLTHVVPGDYV
IIRISDADSSQLAGFRRQEIVPGAIVNVAGADPRQDRVLLKGADGKEVILTTEQANAIWVAPSPGLRGSTSL

Specific function: Metal-dependent DNA-binding protein that controls transcription of many genes involved in iron metabolism [H]

COG id: COG1321

COG function: function code K; Mn-dependent transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH dtxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787038, Length=100, Percent_Identity=41, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007167
- InterPro:   IPR001367
- InterPro:   IPR022689
- InterPro:   IPR022687
- InterPro:   IPR008988
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02742 Fe_dep_repr_C; PF01325 Fe_dep_repress; PF04023 FeoA [H]

EC number: NA

Molecular weight: Translated: 25180; Mature: 25180

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: PS50944 HTH_DTXR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLSEITPVAQDYLKVIWAATEWGGPPITATALAARMGTTTPNVSDTVKRLAAQGLVEYQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
PYKPVMLTERGEKYAIAMVRRHRLLETFLATTLGYPWEEVHDEAERLEHAASETMIERID
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALLGNPATDPHGDPIPTATGHISRSIDAIRLTHVVPGDYVIIRISDADSSQLAGFRRQEI
HHHCCCCCCCCCCCCCCCCCHHHHCCCEEEEEEECCCCEEEEEEECCCCHHHHCCHHHHC
VPGAIVNVAGADPRQDRVLLKGADGKEVILTTEQANAIWVAPSPGLRGSTSL
CCCCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure
MDLSEITPVAQDYLKVIWAATEWGGPPITATALAARMGTTTPNVSDTVKRLAAQGLVEYQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
PYKPVMLTERGEKYAIAMVRRHRLLETFLATTLGYPWEEVHDEAERLEHAASETMIERID
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALLGNPATDPHGDPIPTATGHISRSIDAIRLTHVVPGDYVIIRISDADSSQLAGFRRQEI
HHHCCCCCCCCCCCCCCCCCHHHHCCCEEEEEEECCCCEEEEEEECCCCHHHHCCHHHHC
VPGAIVNVAGADPRQDRVLLKGADGKEVILTTEQANAIWVAPSPGLRGSTSL
CCCCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]