| Definition | Geobacillus thermodenitrificans NG80-2 chromosome, complete genome. |
|---|---|
| Accession | NC_009328 |
| Length | 3,550,319 |
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The map label for this gene is agaR [H]
Identifier: 138895732
GI number: 138895732
Start: 2222396
End: 2224585
Strand: Reverse
Name: agaR [H]
Synonym: GTNG_2088
Alternate gene names: 138895732
Gene position: 2224585-2222396 (Counterclockwise)
Preceding gene: 138895733
Following gene: 138895730
Centisome position: 62.66
GC content: 53.56
Gene sequence:
>2190_bases ATGGCGATTACCTACAATCCGCAAACGAAGCAGTTTCATTTGCGAGCGGACAAAACAAGCTATATCATGCGCCTTTTCCA CTCCGGCTATTTGGCGCACGTGTATTGGGGGAAAGCGGTGCGGGATTGCCAGGCTGCGCGGGGATTTCCACGGCTAAACC GTGCCTTTTCCGCCAACCCCGTCCCATCCGATCGCACGTTTTCGCTCGATACGCTGCCGCAAGAGTATCCGGCCTACGGT AACAGCGATTTTCGCGCTCCGGCGTATCAAGTACAGCTTGAGAATGGTTCGACGGTGACCGATTTGCGCTATAAGACGCA TCATATTTACAAGGGGAAGCCTAGACTTAACGGACTGCCGGCGACATATGTTGAACACGAACACGAGGCAGAAACATTGG AAATTGTCCTTGAAGATGGACTCATTGGCCTCCGAGTGACGTTGCAGTATACCGTTTACGAAAAGTGGAATGTCATCACG CGGGCGGTCCGTTTTGAAAACAACGGCAATGAGCGATTAAAACTGTTGCGGGCGTTGAGCATGAGCATTGATTTTCCGGA TGCCGATTACGACTGGATTCATCTTCCGGGGGCATGGGCGCGCGAGCGTTGGGTGGAGCGGTGTCCGCTTCTCACCGGGG TGCAAGCGGCTGAAAGCCGCCGCGGTGCGAGCAGCCACCAGCAAAACCCGTTCATTGCCCTCGTGCGAAAAAACACTGAT GAGCACCAAGGTGAGGTGTACGGGTTTAGCCTTGTGTACAGCGGTCATTTCCTTGCTCAAATCGAAGTCGATCAGTTTCA AACGGCCCGCGTCTCTATGGGGATCAACCCGTTTGATTTTACGTGGCTATTGGAACCGGGCGAATCGTTCCAAACACCGG AAGTCGTTATGGTCTACTCTGATCAAGGGTTAAATGGGATGTCGCAGACGTACCATGAACTATATCGCACCCGCCTAGCT CGCGGCGCGTTCCGCGACCGCGAACGTCCGATTTTAATCAACAATTGGGAAGCGACGTACTTTCATTTTAACGAAGAGAA ACTTGTCAACATTGCGAAAACGGCCGCGGAACTGGGCATCGAGCTGTTTGTGCTCGATGATGGTTGGTTCGGTGAGCGCG ATGATGACCGTCGTTCCCTCGGTGATTGGGTGGTCAATCGGCGCAAACTCCCGCACGGTTTAGACGGACTAGCAAAACAA GTCAACGAGCTTGGGCTGCAGTTCGGCTTATGGATTGAGCCGGAAATGGTGTCACCCAACAGTGAGCTGTACCGCAAACA TCCGGACTGGGTCCTCCATGTGCCGAACCGTCCGCGCTCTGAAGGGCGGAATCAACTTGTGCTCGATTACTCCCGCCAAG ACGTATGTGATTATATCATTGAAACCATCTCGAATGTGCTTGCGAGCGCTCCGATTGCGTACGTAAAGTGGGACATGAAT CGGCATATGACGGAAATCGGCTCGGCTGCCTTGCCGCCTGAGCGCCAACGCGAAACGGCGCATCGCTATATACTGGGGCT ATATCGCGTTATGGACGAGATTACTTCGCGCTTTCCGTACATTTTGTTTGAAAGCTGTTCGGGAGGGGGAGGACGGTTTG ACCCGGGGATTCTTTACTATATGCCACAAACGTGGACGAGCGACAATACGGATGCCATCTCACGTCTGAAAATTCAATAC GGCACGAGCCTCGTTTACCCGATCAGTGCCATGGGGGCGCACGTCTCGGCTGTACCGAACCACCAGGTCAAGCGGATGAC GCCGCTCAAGACGCGCGGCCATGTCGCGATGTCGGGCAACTTCGGCTATGAGCTTGATATTACGAAGTTGACGGAAAAAG AAAAGGAAACCATTAAAGAACAGGTGGCATTTTACAAAGACGTGCGTCATCTTGTCCAGTTCGGCACGTTTTATCGGCTG TTAAGCCCGTTTGCGGGCAACGAAGCCGCATGGATGTTCGTCTCTGCCGACCGCTCGGAGGCGCTTGTCGCCTACTTCCG TGTTTTGGCCGAAGCGAACGCCCCGCTGTCATACTTGCGCCTTAAGGGGCTTGACCCGAATCAAGACTATGAAGTTGAGG GGCTGGGTGTTTACGGGGGCGACGAGCTGATGTATGCCGGAGTAGCCTTGCCGTACCGTTTGGGTGATTTCATTAGCATG ATGTGGCGATTGAAAGCTGTTCAACGATGA
Upstream 100 bases:
>100_bases GATCCATAGCACCTATCAGGCTCGAATACGGGTACTTTTTTGCTAGATTTTCACGTAAAGTTTACGTAAAATAAAGAAAA GATGAAAGCGGGGGAAGAGG
Downstream 100 bases:
>100_bases AGAGATGTTCTCGCTGGAGCCTATGCACCAACCTAAACGAATCGAACCCGTTGTCGTTTAGACATCGGGTTCAAATTGTT TGAGCTTCTCGATGATGCGG
Product: alpha-galactosidase
Products: NA
Alternate protein names: Melibiase [H]
Number of amino acids: Translated: 729; Mature: 728
Protein sequence:
>729_residues MAITYNPQTKQFHLRADKTSYIMRLFHSGYLAHVYWGKAVRDCQAARGFPRLNRAFSANPVPSDRTFSLDTLPQEYPAYG NSDFRAPAYQVQLENGSTVTDLRYKTHHIYKGKPRLNGLPATYVEHEHEAETLEIVLEDGLIGLRVTLQYTVYEKWNVIT RAVRFENNGNERLKLLRALSMSIDFPDADYDWIHLPGAWARERWVERCPLLTGVQAAESRRGASSHQQNPFIALVRKNTD EHQGEVYGFSLVYSGHFLAQIEVDQFQTARVSMGINPFDFTWLLEPGESFQTPEVVMVYSDQGLNGMSQTYHELYRTRLA RGAFRDRERPILINNWEATYFHFNEEKLVNIAKTAAELGIELFVLDDGWFGERDDDRRSLGDWVVNRRKLPHGLDGLAKQ VNELGLQFGLWIEPEMVSPNSELYRKHPDWVLHVPNRPRSEGRNQLVLDYSRQDVCDYIIETISNVLASAPIAYVKWDMN RHMTEIGSAALPPERQRETAHRYILGLYRVMDEITSRFPYILFESCSGGGGRFDPGILYYMPQTWTSDNTDAISRLKIQY GTSLVYPISAMGAHVSAVPNHQVKRMTPLKTRGHVAMSGNFGYELDITKLTEKEKETIKEQVAFYKDVRHLVQFGTFYRL LSPFAGNEAAWMFVSADRSEALVAYFRVLAEANAPLSYLRLKGLDPNQDYEVEGLGVYGGDELMYAGVALPYRLGDFISM MWRLKAVQR
Sequences:
>Translated_729_residues MAITYNPQTKQFHLRADKTSYIMRLFHSGYLAHVYWGKAVRDCQAARGFPRLNRAFSANPVPSDRTFSLDTLPQEYPAYG NSDFRAPAYQVQLENGSTVTDLRYKTHHIYKGKPRLNGLPATYVEHEHEAETLEIVLEDGLIGLRVTLQYTVYEKWNVIT RAVRFENNGNERLKLLRALSMSIDFPDADYDWIHLPGAWARERWVERCPLLTGVQAAESRRGASSHQQNPFIALVRKNTD EHQGEVYGFSLVYSGHFLAQIEVDQFQTARVSMGINPFDFTWLLEPGESFQTPEVVMVYSDQGLNGMSQTYHELYRTRLA RGAFRDRERPILINNWEATYFHFNEEKLVNIAKTAAELGIELFVLDDGWFGERDDDRRSLGDWVVNRRKLPHGLDGLAKQ VNELGLQFGLWIEPEMVSPNSELYRKHPDWVLHVPNRPRSEGRNQLVLDYSRQDVCDYIIETISNVLASAPIAYVKWDMN RHMTEIGSAALPPERQRETAHRYILGLYRVMDEITSRFPYILFESCSGGGGRFDPGILYYMPQTWTSDNTDAISRLKIQY GTSLVYPISAMGAHVSAVPNHQVKRMTPLKTRGHVAMSGNFGYELDITKLTEKEKETIKEQVAFYKDVRHLVQFGTFYRL LSPFAGNEAAWMFVSADRSEALVAYFRVLAEANAPLSYLRLKGLDPNQDYEVEGLGVYGGDELMYAGVALPYRLGDFISM MWRLKAVQR >Mature_728_residues AITYNPQTKQFHLRADKTSYIMRLFHSGYLAHVYWGKAVRDCQAARGFPRLNRAFSANPVPSDRTFSLDTLPQEYPAYGN SDFRAPAYQVQLENGSTVTDLRYKTHHIYKGKPRLNGLPATYVEHEHEAETLEIVLEDGLIGLRVTLQYTVYEKWNVITR AVRFENNGNERLKLLRALSMSIDFPDADYDWIHLPGAWARERWVERCPLLTGVQAAESRRGASSHQQNPFIALVRKNTDE HQGEVYGFSLVYSGHFLAQIEVDQFQTARVSMGINPFDFTWLLEPGESFQTPEVVMVYSDQGLNGMSQTYHELYRTRLAR GAFRDRERPILINNWEATYFHFNEEKLVNIAKTAAELGIELFVLDDGWFGERDDDRRSLGDWVVNRRKLPHGLDGLAKQV NELGLQFGLWIEPEMVSPNSELYRKHPDWVLHVPNRPRSEGRNQLVLDYSRQDVCDYIIETISNVLASAPIAYVKWDMNR HMTEIGSAALPPERQRETAHRYILGLYRVMDEITSRFPYILFESCSGGGGRFDPGILYYMPQTWTSDNTDAISRLKIQYG TSLVYPISAMGAHVSAVPNHQVKRMTPLKTRGHVAMSGNFGYELDITKLTEKEKETIKEQVAFYKDVRHLVQFGTFYRLL SPFAGNEAAWMFVSADRSEALVAYFRVLAEANAPLSYLRLKGLDPNQDYEVEGLGVYGGDELMYAGVALPYRLGDFISMM WRLKAVQR
Specific function: Alpha-galactosidase associated with the raffinose operon [H]
COG id: COG3345
COG function: function code G; Alpha-galactosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 36 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR002252 - InterPro: IPR017853 - InterPro: IPR000111 [H]
Pfam domain/function: PF02065 Melibiase [H]
EC number: =3.2.1.22 [H]
Molecular weight: Translated: 83663; Mature: 83532
Theoretical pI: Translated: 6.75; Mature: 6.75
Prosite motif: PS00512 ALPHA_GALACTOSIDASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAITYNPQTKQFHLRADKTSYIMRLFHSGYLAHVYWGKAVRDCQAARGFPRLNRAFSANP CEEEECCCCCEEEEECCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCHHHHCCCCCC VPSDRTFSLDTLPQEYPAYGNSDFRAPAYQVQLENGSTVTDLRYKTHHIYKGKPRLNGLP CCCCCEEECCCCCHHCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEEEECCCCCCCCCC ATYVEHEHEAETLEIVLEDGLIGLRVTLQYTVYEKWNVITRAVRFENNGNERLKLLRALS CHHHCCCCCCCEEEEEEECCCEEEEEEEEEEEEHHHHHHEEEEEECCCCHHHHHHHHHHH MSIDFPDADYDWIHLPGAWARERWVERCPLLTGVQAAESRRGASSHQQNPFIALVRKNTD HCCCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCEEEEEECCCC EHQGEVYGFSLVYSGHFLAQIEVDQFQTARVSMGINPFDFTWLLEPGESFQTPEVVMVYS CCCCCEEEEEEEECCEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEC DQGLNGMSQTYHELYRTRLARGAFRDRERPILINNWEATYFHFNEEKLVNIAKTAAELGI CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEEEECHHHHHHHHHHHHHCCE ELFVLDDGWFGERDDDRRSLGDWVVNRRKLPHGLDGLAKQVNELGLQFGLWIEPEMVSPN EEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEECEEECCCEECCC SELYRKHPDWVLHVPNRPRSEGRNQLVLDYSRQDVCDYIIETISNVLASAPIAYVKWDMN HHHHHCCCCEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCEEEEEECCH RHMTEIGSAALPPERQRETAHRYILGLYRVMDEITSRFPYILFESCSGGGGRFDPGILYY HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCEEEE MPQTWTSDNTDAISRLKIQYGTSLVYPISAMGAHVSAVPNHQVKRMTPLKTRGHVAMSGN ECCCCCCCCHHHHHEEEEEECCEEEEEHHHCCCEEECCCCCCHHCCCCCCCCCCEEEECC FGYELDITKLTEKEKETIKEQVAFYKDVRHLVQFGTFYRLLSPFAGNEAAWMFVSADRSE CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCH ALVAYFRVLAEANAPLSYLRLKGLDPNQDYEVEGLGVYGGDELMYAGVALPYRLGDFISM HHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEEEECCCCEEEECEECHHHHHHHHHH MWRLKAVQR HHHHHHHCC >Mature Secondary Structure AITYNPQTKQFHLRADKTSYIMRLFHSGYLAHVYWGKAVRDCQAARGFPRLNRAFSANP EEEECCCCCEEEEECCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCHHHHCCCCCC VPSDRTFSLDTLPQEYPAYGNSDFRAPAYQVQLENGSTVTDLRYKTHHIYKGKPRLNGLP CCCCCEEECCCCCHHCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEEEECCCCCCCCCC ATYVEHEHEAETLEIVLEDGLIGLRVTLQYTVYEKWNVITRAVRFENNGNERLKLLRALS CHHHCCCCCCCEEEEEEECCCEEEEEEEEEEEEHHHHHHEEEEEECCCCHHHHHHHHHHH MSIDFPDADYDWIHLPGAWARERWVERCPLLTGVQAAESRRGASSHQQNPFIALVRKNTD HCCCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCEEEEEECCCC EHQGEVYGFSLVYSGHFLAQIEVDQFQTARVSMGINPFDFTWLLEPGESFQTPEVVMVYS CCCCCEEEEEEEECCEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEC DQGLNGMSQTYHELYRTRLARGAFRDRERPILINNWEATYFHFNEEKLVNIAKTAAELGI CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEEEECHHHHHHHHHHHHHCCE ELFVLDDGWFGERDDDRRSLGDWVVNRRKLPHGLDGLAKQVNELGLQFGLWIEPEMVSPN EEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEECEEECCCEECCC SELYRKHPDWVLHVPNRPRSEGRNQLVLDYSRQDVCDYIIETISNVLASAPIAYVKWDMN HHHHHCCCCEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCEEEEEECCH RHMTEIGSAALPPERQRETAHRYILGLYRVMDEITSRFPYILFESCSGGGGRFDPGILYY HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCEEEE MPQTWTSDNTDAISRLKIQYGTSLVYPISAMGAHVSAVPNHQVKRMTPLKTRGHVAMSGN ECCCCCCCCHHHHHEEEEEECCEEEEEHHHCCCEEECCCCCCHHCCCCCCCCCCEEEECC FGYELDITKLTEKEKETIKEQVAFYKDVRHLVQFGTFYRLLSPFAGNEAAWMFVSADRSE CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCH ALVAYFRVLAEANAPLSYLRLKGLDPNQDYEVEGLGVYGGDELMYAGVALPYRLGDFISM HHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEEEECCCCEEEECEECHHHHHHHHHH MWRLKAVQR HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA