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The map label for this gene is ycjO [C]

Identifier: 138895665

GI number: 138895665

Start: 2139518

End: 2140825

Strand: Reverse

Name: ycjO [C]

Synonym: GTNG_2021

Alternate gene names: 138895665

Gene position: 2140825-2139518 (Counterclockwise)

Preceding gene: 138895666

Following gene: 138895664

Centisome position: 60.3

GC content: 46.94

Gene sequence:

>1308_bases
ATGAGGAATGAAAAGAGAATGGAGCGGATCTTAGGTTATTCGCTCGTCGCGCCGGCGTTGTTATTGATTTTAGCGATTGC
TATTTGGCCAGTCATCCAATCGTTTTATTACAGCCTGTTCGACTATCGGCTTAACGACCCGAGGAAATCATCGATTCATT
TAAACTACAGCCTTGACCTAGAGGGGTACTTGCAAAACTACCCGTTCTTACAAAGTGCCCTTAAACAAGAATTAGCTACT
GCGGAAGGAACAGTAAAAGAAACGCTCGCCGAAGTGGAACAAAAATTAACGGATATGGATGCCGCCATCCGCAAGGACGA
ACAGGTGGCGAAACAATACGACCAAGTAAACGAAGCGCTTGATAACTTCGAGACGCCGAGTGAAGAAGTGAAAATTGCTG
AGTTGGACGAACAAACGGCCAAACAGCTGATCAGCACGGTGGACAGCGCTGTTCAAACGTTGAAGCAAATTCACCAGGAT
GGGGGGCTCAAGCAGCCTGATAAAGTCGTTGGCCTTGCTGAAGGGCTGACCGGTGTCGTCATTGAACCGAACTTTGTCGG
TCTGAAGCATTATAAAGACAATTTTAGCGATCCGCGCTTATGGAAGGCGCTATGGAATACGACGTTCTTTACTGTTGTGT
CGGTCGCAGTTGAGCTTGTGCTCGGGTTGGCCATCGCCTTGCTCATTAACAAAGCATTTTTCGGCCGTGGGCTTGTTCGG
GCGACGATTTTAGTGCCATGGGCCATTCCGACCGCTGTATCGGCACTGATGTGGAAGTTTTTATATGATGGGCAAAACGG
GATTGTTGCTAAATATTTTGAAAATATTGGTCTTGTTGACCGTATGGGAGATTTGCTAACGACAGAAGCAGGGGCGATGT
TTGCCGTCATTTTTGCTGATGTGTGGAAAACAACGCCGTATATGGCTTTGTTACTGCTTGCTGGGCTCCAAACAATCCCA
AGCTCGCTATATGAAGCCGCTTCGATCGACGGAGCAACGAAATGGCAACAGTTCGTCAAAGTGACGTTGCCACTGCTGAA
ATCAAGTATTTTGGTGGCTCTTTTGTTCCGGACGCTGGATGCGTTCCGCGTGTTCGATCTGATATTCGTATTAACCGGCG
GAGGTCCGGCGAATTCGACGGAAACGATTTCGATTTTAGCGTATAAAGTCATGTTCTCGCAGACGAATTTTGGAAATGGA
TCGGCGTTGGCAGTCATCGTGTTTATTTGTGTCGCCATCATTTCAATGATTTATATTAAGTGGCTCGGTAAAGATTTATT
GTCCGACAGTGCGAGTGCGAAACGATAA

Upstream 100 bases:

>100_bases
AACGGAGGAAGCCATTCGCTATGTATTAGCCTTCAGGCCGCTCTCTATCCGGTACTGAAGGCTAATACCCTTTTTAACAA
AGAGAAGGGGGAAGGCAGCG

Downstream 100 bases:

>100_bases
GGGAGGTGAGATCATGACGAAAAAAGCAGGACCTCTTTTTTATATCTTTCTCGTCGTATTCGTCTTTTTTGTCATGTTTC
CGTTTTTATGGGTGTTGCTC

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MRNEKRMERILGYSLVAPALLLILAIAIWPVIQSFYYSLFDYRLNDPRKSSIHLNYSLDLEGYLQNYPFLQSALKQELAT
AEGTVKETLAEVEQKLTDMDAAIRKDEQVAKQYDQVNEALDNFETPSEEVKIAELDEQTAKQLISTVDSAVQTLKQIHQD
GGLKQPDKVVGLAEGLTGVVIEPNFVGLKHYKDNFSDPRLWKALWNTTFFTVVSVAVELVLGLAIALLINKAFFGRGLVR
ATILVPWAIPTAVSALMWKFLYDGQNGIVAKYFENIGLVDRMGDLLTTEAGAMFAVIFADVWKTTPYMALLLLAGLQTIP
SSLYEAASIDGATKWQQFVKVTLPLLKSSILVALLFRTLDAFRVFDLIFVLTGGGPANSTETISILAYKVMFSQTNFGNG
SALAVIVFICVAIISMIYIKWLGKDLLSDSASAKR

Sequences:

>Translated_435_residues
MRNEKRMERILGYSLVAPALLLILAIAIWPVIQSFYYSLFDYRLNDPRKSSIHLNYSLDLEGYLQNYPFLQSALKQELAT
AEGTVKETLAEVEQKLTDMDAAIRKDEQVAKQYDQVNEALDNFETPSEEVKIAELDEQTAKQLISTVDSAVQTLKQIHQD
GGLKQPDKVVGLAEGLTGVVIEPNFVGLKHYKDNFSDPRLWKALWNTTFFTVVSVAVELVLGLAIALLINKAFFGRGLVR
ATILVPWAIPTAVSALMWKFLYDGQNGIVAKYFENIGLVDRMGDLLTTEAGAMFAVIFADVWKTTPYMALLLLAGLQTIP
SSLYEAASIDGATKWQQFVKVTLPLLKSSILVALLFRTLDAFRVFDLIFVLTGGGPANSTETISILAYKVMFSQTNFGNG
SALAVIVFICVAIISMIYIKWLGKDLLSDSASAKR
>Mature_435_residues
MRNEKRMERILGYSLVAPALLLILAIAIWPVIQSFYYSLFDYRLNDPRKSSIHLNYSLDLEGYLQNYPFLQSALKQELAT
AEGTVKETLAEVEQKLTDMDAAIRKDEQVAKQYDQVNEALDNFETPSEEVKIAELDEQTAKQLISTVDSAVQTLKQIHQD
GGLKQPDKVVGLAEGLTGVVIEPNFVGLKHYKDNFSDPRLWKALWNTTFFTVVSVAVELVLGLAIALLINKAFFGRGLVR
ATILVPWAIPTAVSALMWKFLYDGQNGIVAKYFENIGLVDRMGDLLTTEAGAMFAVIFADVWKTTPYMALLLLAGLQTIP
SSLYEAASIDGATKWQQFVKVTLPLLKSSILVALLFRTLDAFRVFDLIFVLTGGGPANSTETISILAYKVMFSQTNFGNG
SALAVIVFICVAIISMIYIKWLGKDLLSDSASAKR

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane (Probable) [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=232, Percent_Identity=32.3275862068966, Blast_Score=128, Evalue=8e-31,
Organism=Escherichia coli, GI1790465, Length=462, Percent_Identity=23.8095238095238, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI1789861, Length=243, Percent_Identity=29.6296296296296, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI87082099, Length=231, Percent_Identity=26.8398268398268, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 48233; Mature: 48233

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNEKRMERILGYSLVAPALLLILAIAIWPVIQSFYYSLFDYRLNDPRKSSIHLNYSLDL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECH
EGYLQNYPFLQSALKQELATAEGTVKETLAEVEQKLTDMDAAIRKDEQVAKQYDQVNEAL
HHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DNFETPSEEVKIAELDEQTAKQLISTVDSAVQTLKQIHQDGGLKQPDKVVGLAEGLTGVV
HCCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEE
IEPNFVGLKHYKDNFSDPRLWKALWNTTFFTVVSVAVELVLGLAIALLINKAFFGRGLVR
ECCCCEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
ATILVPWAIPTAVSALMWKFLYDGQNGIVAKYFENIGLVDRMGDLLTTEAGAMFAVIFAD
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
VWKTTPYMALLLLAGLQTIPSSLYEAASIDGATKWQQFVKVTLPLLKSSILVALLFRTLD
HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFRVFDLIFVLTGGGPANSTETISILAYKVMFSQTNFGNGSALAVIVFICVAIISMIYIK
HHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
WLGKDLLSDSASAKR
HHHHHHHCCCCCCCC
>Mature Secondary Structure
MRNEKRMERILGYSLVAPALLLILAIAIWPVIQSFYYSLFDYRLNDPRKSSIHLNYSLDL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECH
EGYLQNYPFLQSALKQELATAEGTVKETLAEVEQKLTDMDAAIRKDEQVAKQYDQVNEAL
HHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DNFETPSEEVKIAELDEQTAKQLISTVDSAVQTLKQIHQDGGLKQPDKVVGLAEGLTGVV
HCCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEE
IEPNFVGLKHYKDNFSDPRLWKALWNTTFFTVVSVAVELVLGLAIALLINKAFFGRGLVR
ECCCCEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
ATILVPWAIPTAVSALMWKFLYDGQNGIVAKYFENIGLVDRMGDLLTTEAGAMFAVIFAD
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
VWKTTPYMALLLLAGLQTIPSSLYEAASIDGATKWQQFVKVTLPLLKSSILVALLFRTLD
HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFRVFDLIFVLTGGGPANSTETISILAYKVMFSQTNFGNGSALAVIVFICVAIISMIYIK
HHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
WLGKDLLSDSASAKR
HHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA