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The map label for this gene is yiaM [C]

Identifier: 138895592

GI number: 138895592

Start: 2069215

End: 2069793

Strand: Reverse

Name: yiaM [C]

Synonym: GTNG_1945

Alternate gene names: 138895592

Gene position: 2069793-2069215 (Counterclockwise)

Preceding gene: 138895593

Following gene: 138895591

Centisome position: 58.3

GC content: 49.57

Gene sequence:

>579_bases
ATGAAAAGGATCGGAGCCGTTCTGGAGAAGACGCTCAATGCATTGATGGCGCTATGTCTCGCTTTGATGTCTATTCTTGT
TTTCGGCAACGTCGTGTTGCGCTACGGATTTAACTCCGGCATTACGTGGTCGGAAGAAATGTCCCGCTTTCTCTTTATTT
GGATGTCGTTTTTCGGGGCTATTGGCGCGTTAAAAGACAACGATCACTTAGGCGTCGACACGCTGCTTAGGAAGCTGCCG
TCTAGCGCCAAACGCATCGTCTTTATCATGAGCAACGTGATCGTACTTTATGTGCTCTATTTGCTTTTTGATGGAAGCTG
GAAGATGACGATCAGCGGCTTGGAAAGCAAAGCCCCAGCGACCGGGCTGCCGATGGCGTTCATTTATGGAACCGGGCTTG
TTGTGAGCGTCGGCATGGGAATCATCACCTTGTTTCATATGTATCAGGCGCTGTTTCGTCCCGGTGCAATTGATGAGCTG
ACGAGAATGAAAGAATCGGAAGAAGAAATTATGGAGGCAGCTCATGGGGAGATGACGAAATGGCATCAAAAACAAGGCGC
CGTCGGAGGTGAGAGGTAG

Upstream 100 bases:

>100_bases
TTGAAGCAGGAAAATAACAGAATGGCACAACGACTCTTGAGGAGAAATGCCCCTTAAGAGTCATTCCATTCTTTGATGAC
AGACTTAGGGGAGGAACACA

Downstream 100 bases:

>100_bases
ATGGCATTGGTAGTATTTGTCGGATCGCTGCTCGGCGTGATGGCGCTTGGGCTGCCGATCGCGTTTGCGTTGCTCGTCAG
CGGGGTTGCACTCATGTTTT

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MKRIGAVLEKTLNALMALCLALMSILVFGNVVLRYGFNSGITWSEEMSRFLFIWMSFFGAIGALKDNDHLGVDTLLRKLP
SSAKRIVFIMSNVIVLYVLYLLFDGSWKMTISGLESKAPATGLPMAFIYGTGLVVSVGMGIITLFHMYQALFRPGAIDEL
TRMKESEEEIMEAAHGEMTKWHQKQGAVGGER

Sequences:

>Translated_192_residues
MKRIGAVLEKTLNALMALCLALMSILVFGNVVLRYGFNSGITWSEEMSRFLFIWMSFFGAIGALKDNDHLGVDTLLRKLP
SSAKRIVFIMSNVIVLYVLYLLFDGSWKMTISGLESKAPATGLPMAFIYGTGLVVSVGMGIITLFHMYQALFRPGAIDEL
TRMKESEEEIMEAAHGEMTKWHQKQGAVGGER
>Mature_192_residues
MKRIGAVLEKTLNALMALCLALMSILVFGNVVLRYGFNSGITWSEEMSRFLFIWMSFFGAIGALKDNDHLGVDTLLRKLP
SSAKRIVFIMSNVIVLYVLYLLFDGSWKMTISGLESKAPATGLPMAFIYGTGLVVSVGMGIITLFHMYQALFRPGAIDEL
TRMKESEEEIMEAAHGEMTKWHQKQGAVGGER

Specific function: Unknown

COG id: COG3090

COG function: function code G; TRAP-type C4-dicarboxylate transport system, small permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter small permease family [H]

Homologues:

Organism=Escherichia coli, GI1790002, Length=152, Percent_Identity=34.8684210526316, Blast_Score=103, Evalue=5e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007387 [H]

Pfam domain/function: PF04290 DctQ [H]

EC number: NA

Molecular weight: Translated: 21336; Mature: 21336

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
6.8 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
6.8 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIGAVLEKTLNALMALCLALMSILVFGNVVLRYGFNSGITWSEEMSRFLFIWMSFFGA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
IGALKDNDHLGVDTLLRKLPSSAKRIVFIMSNVIVLYVLYLLFDGSWKMTISGLESKAPA
HCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
TGLPMAFIYGTGLVVSVGMGIITLFHMYQALFRPGAIDELTRMKESEEEIMEAAHGEMTK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHH
WHQKQGAVGGER
HHHHHCCCCCCC
>Mature Secondary Structure
MKRIGAVLEKTLNALMALCLALMSILVFGNVVLRYGFNSGITWSEEMSRFLFIWMSFFGA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
IGALKDNDHLGVDTLLRKLPSSAKRIVFIMSNVIVLYVLYLLFDGSWKMTISGLESKAPA
HCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
TGLPMAFIYGTGLVVSVGMGIITLFHMYQALFRPGAIDELTRMKESEEEIMEAAHGEMTK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHH
WHQKQGAVGGER
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]