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The map label for this gene is yfdE [H]

Identifier: 138895587

GI number: 138895587

Start: 2063344

End: 2064543

Strand: Reverse

Name: yfdE [H]

Synonym: GTNG_1940

Alternate gene names: 138895587

Gene position: 2064543-2063344 (Counterclockwise)

Preceding gene: 138895588

Following gene: 138895586

Centisome position: 58.15

GC content: 52.0

Gene sequence:

>1200_bases
ATGGGATGTTTGCCGTTAGAAGGTGTCAAAGTGCTTGATGTTTCGACGATGATCGCCGCACCGTTTGGCGCGGTATTGCT
CGGCGACTTTGGCGCTGACGTCATTAAAGTGGAGTTGCCGGGAAAAGGAGATACGCTGCGCCATGTCGGGCCGTTTAAGG
ATGGCGAGCCGCTTCGCTGGCCAGGACTGGCACGTAATAAGAAATCGCTCACCCTTGATTTACGCAAAGAAGAAGGAATG
AACATTTTCAAGCAACTCGTCCGCCATGTTGACATCGTCATTGAAAACTTCCGCCCTGGCACGTTAGAAAAATGGGGCGG
CGGATATGAGGAGCTGAAACAAATCAACCCGAACTTGGTCATGATCCGCGTCTCCGGTTACGGCCAAACGGGGCCGTTCC
GGGAAAAAGCCGGGTTTGGCACACCGGCGACGGCGTTCAGCGGGTTTACGTACTTGCAAGGGTATCCAGATCGCCCGCCG
GTTAGCCCGTCGTTTTCGTTAACGGACTATATTACAGGCATTTATGTGGCGTTTGCGGCGGTGACCGCTATTTACTACCG
TGATGTTCATCCGGACGGGGAAGGACAGATGGTTGATATCGGCCTTTACGAATCGGTATTCCGCATGATGGAATTTTTAA
TTGCCGAATACGACCAATTAGGCAAGGTGCGCGAGCGGTCACCGGGACTATCGGGACATTCAAGCCCGGCCGGCACGTTT
ATGACGAAGGACGGGCATTGGGTCGTGCTGGTCACAAGCACCGATTCGACGTTCGAACGGCTGGCAAAGGTGATGGGCAG
AGAAGATTTATTGACGAACGAGAAGTTTTGCACCAATGCACGGCGCCTCGCCCATCATGAAGAAACGAACGGTATCGTTG
CCGACTGGATTCGTTCCAAACCGCGCGATGAACTGCTCCGGATTTTGGACGAACACGGGGTGCCGGTCAGCCCGATTTTA
AGCATTAAAGATATTTTCGAGCATCCGCATTACCAGGCACGGGAAAATATTATCGAAGTGGCTCATCCGCGGCTCGGCAA
AATTAAAGTGCCTGGCATTGTGCCAAAATTTGAAAAAACGCCAGGTTCGGTGCGTCAGCTTGCGCCAGACTTAGGGGAGC
ATACGGAAGAAATTTTGCAAAGTATGCTCGGTATGTCCGAGGAGGACATTCGGCAACTGAAAGAAAAAGAGATTATTTAA

Upstream 100 bases:

>100_bases
GTTCGGCCCCGGGGCAAATTCCAATTGAGGAAGTCAAGGATGTCTTATCGGTCATCATGAAATATAGCCAATGAATGAGA
ATTTGAGGGAGGAGAAGCCA

Downstream 100 bases:

>100_bases
GCGGGGCGGCATGTCCCGTCTACTCCCGGCGTTTCGTTTGGAGAGGGCCGGGCTTTTTTATGAGGCTTAGTCGTGTGGGA
GAAAACGTTTCTTTTTGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MGCLPLEGVKVLDVSTMIAAPFGAVLLGDFGADVIKVELPGKGDTLRHVGPFKDGEPLRWPGLARNKKSLTLDLRKEEGM
NIFKQLVRHVDIVIENFRPGTLEKWGGGYEELKQINPNLVMIRVSGYGQTGPFREKAGFGTPATAFSGFTYLQGYPDRPP
VSPSFSLTDYITGIYVAFAAVTAIYYRDVHPDGEGQMVDIGLYESVFRMMEFLIAEYDQLGKVRERSPGLSGHSSPAGTF
MTKDGHWVVLVTSTDSTFERLAKVMGREDLLTNEKFCTNARRLAHHEETNGIVADWIRSKPRDELLRILDEHGVPVSPIL
SIKDIFEHPHYQARENIIEVAHPRLGKIKVPGIVPKFEKTPGSVRQLAPDLGEHTEEILQSMLGMSEEDIRQLKEKEII

Sequences:

>Translated_399_residues
MGCLPLEGVKVLDVSTMIAAPFGAVLLGDFGADVIKVELPGKGDTLRHVGPFKDGEPLRWPGLARNKKSLTLDLRKEEGM
NIFKQLVRHVDIVIENFRPGTLEKWGGGYEELKQINPNLVMIRVSGYGQTGPFREKAGFGTPATAFSGFTYLQGYPDRPP
VSPSFSLTDYITGIYVAFAAVTAIYYRDVHPDGEGQMVDIGLYESVFRMMEFLIAEYDQLGKVRERSPGLSGHSSPAGTF
MTKDGHWVVLVTSTDSTFERLAKVMGREDLLTNEKFCTNARRLAHHEETNGIVADWIRSKPRDELLRILDEHGVPVSPIL
SIKDIFEHPHYQARENIIEVAHPRLGKIKVPGIVPKFEKTPGSVRQLAPDLGEHTEEILQSMLGMSEEDIRQLKEKEII
>Mature_398_residues
GCLPLEGVKVLDVSTMIAAPFGAVLLGDFGADVIKVELPGKGDTLRHVGPFKDGEPLRWPGLARNKKSLTLDLRKEEGMN
IFKQLVRHVDIVIENFRPGTLEKWGGGYEELKQINPNLVMIRVSGYGQTGPFREKAGFGTPATAFSGFTYLQGYPDRPPV
SPSFSLTDYITGIYVAFAAVTAIYYRDVHPDGEGQMVDIGLYESVFRMMEFLIAEYDQLGKVRERSPGLSGHSSPAGTFM
TKDGHWVVLVTSTDSTFERLAKVMGREDLLTNEKFCTNARRLAHHEETNGIVADWIRSKPRDELLRILDEHGVPVSPILS
IKDIFEHPHYQARENIIEVAHPRLGKIKVPGIVPKFEKTPGSVRQLAPDLGEHTEEILQSMLGMSEEDIRQLKEKEII

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=396, Percent_Identity=33.5858585858586, Blast_Score=235, Evalue=6e-62,
Organism=Homo sapiens, GI300863124, Length=422, Percent_Identity=31.9905213270142, Blast_Score=224, Evalue=8e-59,
Organism=Homo sapiens, GI300863126, Length=396, Percent_Identity=30.3030303030303, Blast_Score=193, Evalue=2e-49,
Organism=Homo sapiens, GI13376042, Length=422, Percent_Identity=28.6729857819905, Blast_Score=175, Evalue=6e-44,
Organism=Homo sapiens, GI42794625, Length=404, Percent_Identity=28.4653465346535, Blast_Score=150, Evalue=2e-36,
Organism=Homo sapiens, GI266456254, Length=404, Percent_Identity=28.4653465346535, Blast_Score=150, Evalue=3e-36,
Organism=Homo sapiens, GI266458393, Length=283, Percent_Identity=29.3286219081272, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI266458397, Length=262, Percent_Identity=29.3893129770992, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI42822893, Length=145, Percent_Identity=35.1724137931034, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI266458395, Length=145, Percent_Identity=35.1724137931034, Blast_Score=94, Evalue=2e-19,
Organism=Escherichia coli, GI87082093, Length=377, Percent_Identity=32.8912466843501, Blast_Score=214, Evalue=1e-56,
Organism=Escherichia coli, GI1788717, Length=417, Percent_Identity=27.8177458033573, Blast_Score=172, Evalue=4e-44,
Organism=Escherichia coli, GI1786222, Length=402, Percent_Identity=29.6019900497512, Blast_Score=144, Evalue=8e-36,
Organism=Caenorhabditis elegans, GI115535051, Length=360, Percent_Identity=26.6666666666667, Blast_Score=123, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI32564160, Length=340, Percent_Identity=25.8823529411765, Blast_Score=113, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24648431, Length=400, Percent_Identity=32, Blast_Score=212, Evalue=4e-55,
Organism=Drosophila melanogaster, GI24585488, Length=365, Percent_Identity=26.5753424657534, Blast_Score=120, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44511; Mature: 44379

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGCLPLEGVKVLDVSTMIAAPFGAVLLGDFGADVIKVELPGKGDTLRHVGPFKDGEPLRW
CCCCCCCCCEEEEHHHHHHCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
PGLARNKKSLTLDLRKEEGMNIFKQLVRHVDIVIENFRPGTLEKWGGGYEELKQINPNLV
CCCCCCCCCEEEEECHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHCCCCEE
MIRVSGYGQTGPFREKAGFGTPATAFSGFTYLQGYPDRPPVSPSFSLTDYITGIYVAFAA
EEEEECCCCCCCCHHHCCCCCCHHHHCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
VTAIYYRDVHPDGEGQMVDIGLYESVFRMMEFLIAEYDQLGKVRERSPGLSGHSSPAGTF
HHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
MTKDGHWVVLVTSTDSTFERLAKVMGREDLLTNEKFCTNARRLAHHEETNGIVADWIRSK
EECCCCEEEEEECCCHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHCC
PRDELLRILDEHGVPVSPILSIKDIFEHPHYQARENIIEVAHPRLGKIKVPGIVPKFEKT
CHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCC
PGSVRQLAPDLGEHTEEILQSMLGMSEEDIRQLKEKEII
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
GCLPLEGVKVLDVSTMIAAPFGAVLLGDFGADVIKVELPGKGDTLRHVGPFKDGEPLRW
CCCCCCCCEEEEHHHHHHCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
PGLARNKKSLTLDLRKEEGMNIFKQLVRHVDIVIENFRPGTLEKWGGGYEELKQINPNLV
CCCCCCCCCEEEEECHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHCCCCEE
MIRVSGYGQTGPFREKAGFGTPATAFSGFTYLQGYPDRPPVSPSFSLTDYITGIYVAFAA
EEEEECCCCCCCCHHHCCCCCCHHHHCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
VTAIYYRDVHPDGEGQMVDIGLYESVFRMMEFLIAEYDQLGKVRERSPGLSGHSSPAGTF
HHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
MTKDGHWVVLVTSTDSTFERLAKVMGREDLLTNEKFCTNARRLAHHEETNGIVADWIRSK
EECCCCEEEEEECCCHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHCC
PRDELLRILDEHGVPVSPILSIKDIFEHPHYQARENIIEVAHPRLGKIKVPGIVPKFEKT
CHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCC
PGSVRQLAPDLGEHTEEILQSMLGMSEEDIRQLKEKEII
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]