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The map label for this gene is ocd2 [H]

Identifier: 138894477

GI number: 138894477

Start: 880020

End: 881003

Strand: Direct

Name: ocd2 [H]

Synonym: GTNG_0807

Alternate gene names: 138894477

Gene position: 880020-881003 (Clockwise)

Preceding gene: 138894476

Following gene: 138894478

Centisome position: 24.79

GC content: 51.73

Gene sequence:

>984_bases
ATGCTTATTTTGTCGGAGAAAGAAATTCAGCGTCTGTATACGATGGAGGATGCTATTTCCGATGTAAAGGAAATGTTGCA
TCAAAAACAGTCAGGGAATGTGAACACCCCTGAGCGCACAGTGCTTTCTTTTCCGCATGATGACGCTTCGATTTTGTATA
TGCCTTCTGCGGAGGAGAGAGCGGCGGCGGTGAAAGTGGTGAGCATTTTTCCGCACAATCCCGCTTTAGGAAAACCGACA
ACCCAAGGAGTTATGATATTCACAGATACGAAAACTGGGGAGCACCGGATGCTTTGCAGTGCCACTTATTTGACGCGGCT
GAGAACAGGAGCGCTATCGGCGATCGCTGCCGACTATTTAGCCAAACGAGAGGCATCGCGATTAGCCGTGATCGGAACAG
GGGCGATGGCGAGGGAACAAGTAGCCGGCATGCTTGCGGTCAGGGAGATCGAGCATATTTTCTTATACAACCGGACGAGA
AGCAAAGCGGAACATTTTGCGTTGGACATGCAGCGAATGAACTCTTGCTGGAAAGGAAAAGTGCACATCGTCGATGACGC
AAATGAGGCCGTCCGCCAGGCGGACATTGTTGTATGCAGCACGCGCTCGGAGCAACCGGTATTCTCAAGTCGGGCGCTGC
AGCCGGGCACGCACGTTAGCGCCATCGGTTCGTATTTGCCGCATATGCGTGAATTGGATGTGGAAACTATCGTTATGGCT
GACCGTATTGTTGTTGATACGGTGGAGGGCGCCAAGCATGAGGCAGGAGAACTTATTCAGGCGGCCGAGAGCGGAAAATG
GTCTTTTTCCCGAATTGATGCCGAAATCGGGGAACTCGTCACCGGGGAGAAAGCCGGGCGGCAACATGAACAGGAAATCA
CCTTGTTTAAATCGGTTGGAGCAGCTTTCTATGATTTGGCCGTGGCGATGGGCGTCTATCAAAAGGCGACGGAGCTCGGA
GCAGGGCAAGAAATTGAGTTGTAA

Upstream 100 bases:

>100_bases
ATCGCAGTTTGGTCGGTGCGCGACCGCAAACATGAGGAACTTGATGAGGAAGACGGAATCGCGTAACGCGGTTCCGTTTC
GTTCTAACGGAGGGAGAATC

Downstream 100 bases:

>100_bases
GGGATGCATATGTTGTTTTGGAGAGAGACAGGCGGTCGTTTTCCGGACGGCTGTCCGTCCATTTTTTGGGCCGTTTCCAT
CCGCGTCACCTTTGGGCCTA

Product: ornithine cyclodeaminase/mu-crystallin family protein

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MLILSEKEIQRLYTMEDAISDVKEMLHQKQSGNVNTPERTVLSFPHDDASILYMPSAEERAAAVKVVSIFPHNPALGKPT
TQGVMIFTDTKTGEHRMLCSATYLTRLRTGALSAIAADYLAKREASRLAVIGTGAMAREQVAGMLAVREIEHIFLYNRTR
SKAEHFALDMQRMNSCWKGKVHIVDDANEAVRQADIVVCSTRSEQPVFSSRALQPGTHVSAIGSYLPHMRELDVETIVMA
DRIVVDTVEGAKHEAGELIQAAESGKWSFSRIDAEIGELVTGEKAGRQHEQEITLFKSVGAAFYDLAVAMGVYQKATELG
AGQEIEL

Sequences:

>Translated_327_residues
MLILSEKEIQRLYTMEDAISDVKEMLHQKQSGNVNTPERTVLSFPHDDASILYMPSAEERAAAVKVVSIFPHNPALGKPT
TQGVMIFTDTKTGEHRMLCSATYLTRLRTGALSAIAADYLAKREASRLAVIGTGAMAREQVAGMLAVREIEHIFLYNRTR
SKAEHFALDMQRMNSCWKGKVHIVDDANEAVRQADIVVCSTRSEQPVFSSRALQPGTHVSAIGSYLPHMRELDVETIVMA
DRIVVDTVEGAKHEAGELIQAAESGKWSFSRIDAEIGELVTGEKAGRQHEQEITLFKSVGAAFYDLAVAMGVYQKATELG
AGQEIEL
>Mature_327_residues
MLILSEKEIQRLYTMEDAISDVKEMLHQKQSGNVNTPERTVLSFPHDDASILYMPSAEERAAAVKVVSIFPHNPALGKPT
TQGVMIFTDTKTGEHRMLCSATYLTRLRTGALSAIAADYLAKREASRLAVIGTGAMAREQVAGMLAVREIEHIFLYNRTR
SKAEHFALDMQRMNSCWKGKVHIVDDANEAVRQADIVVCSTRSEQPVFSSRALQPGTHVSAIGSYLPHMRELDVETIVMA
DRIVVDTVEGAKHEAGELIQAAESGKWSFSRIDAEIGELVTGEKAGRQHEQEITLFKSVGAAFYDLAVAMGVYQKATELG
AGQEIEL

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=286, Percent_Identity=28.6713286713287, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI62241008, Length=280, Percent_Identity=28.9285714285714, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24642678, Length=265, Percent_Identity=27.9245283018868, Blast_Score=81, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 35992; Mature: 35992

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILSEKEIQRLYTMEDAISDVKEMLHQKQSGNVNTPERTVLSFPHDDASILYMPSAEER
CEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCEEEECCCCHHH
AAAVKVVSIFPHNPALGKPTTQGVMIFTDTKTGEHRMLCSATYLTRLRTGALSAIAADYL
HHEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHH
AKREASRLAVIGTGAMAREQVAGMLAVREIEHIFLYNRTRSKAEHFALDMQRMNSCWKGK
HHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHCCC
VHIVDDANEAVRQADIVVCSTRSEQPVFSSRALQPGTHVSAIGSYLPHMRELDVETIVMA
EEEEECCHHHHHHCCEEEEECCCCCCCHHCCCCCCCCHHHHHHHHCCHHHHCCHHHEEEC
DRIVVDTVEGAKHEAGELIQAAESGKWSFSRIDAEIGELVTGEKAGRQHEQEITLFKSVG
CCEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
AAFYDLAVAMGVYQKATELGAGQEIEL
HHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLILSEKEIQRLYTMEDAISDVKEMLHQKQSGNVNTPERTVLSFPHDDASILYMPSAEER
CEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCEEEECCCCHHH
AAAVKVVSIFPHNPALGKPTTQGVMIFTDTKTGEHRMLCSATYLTRLRTGALSAIAADYL
HHEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHH
AKREASRLAVIGTGAMAREQVAGMLAVREIEHIFLYNRTRSKAEHFALDMQRMNSCWKGK
HHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHCCC
VHIVDDANEAVRQADIVVCSTRSEQPVFSSRALQPGTHVSAIGSYLPHMRELDVETIVMA
EEEEECCHHHHHHCCEEEEECCCCCCCHHCCCCCCCCHHHHHHHHCCHHHHCCHHHEEEC
DRIVVDTVEGAKHEAGELIQAAESGKWSFSRIDAEIGELVTGEKAGRQHEQEITLFKSVG
CCEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
AAFYDLAVAMGVYQKATELGAGQEIEL
HHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]