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The map label for this gene is rplY

Identifier: 138893724

GI number: 138893724

Start: 55429

End: 56061

Strand: Direct

Name: rplY

Synonym: GTNG_0045

Alternate gene names: 138893724

Gene position: 55429-56061 (Clockwise)

Preceding gene: 138893723

Following gene: 138893725

Centisome position: 1.56

GC content: 52.45

Gene sequence:

>633_bases
ATGGCGATTGTGTTGGGAGCGAAAGAACGCAAGGACAAAAAACATTCAACATTGCGGCGTATTCGTTCGCAAGGAGGCAT
TCCGGCGGTATTGTACGGCAAAAAGGTCGATAATAAAATGATTTCCATCAGCGCCGCTGATCTTGAGAAGGCGCTACGCG
AGGGTGGACGTCACAGCTTAGTGACGCTGAAAGTCGACGGGGAAGATTACTCGGTTCTATTGCGTGAAGTGCAGCGTGAT
CCATTGCGTGGCGAGCTTCTTCACGCTGACTTTCAAGCGGTCGATATGTCGGCGGAAGTCGATGTTGACGTGGAAGTCCG
CTTAGTGGGCGAAGCGCCTGGAGTAAAAGATGGCGGCGTGTTGCAGCAAAACTTGCACGAATTATCGATCCGCGTTTTGC
CGGCAAACATTCCGCCTGCGATTGAAGTGGACATCTCCGGTTTGCAAGTCGGCGATGTCATCACAGTCGGCGACGTGCAA
ACAGGCGGAACATTTGAAATCAATCATGAACCTTCCGAAGTCATCGCGACGATCTTGCCGCCGCAACAGGAAGAAGAAAT
CCATAGCGGTGAGCAGCAAGAGCCGGGACAGCCTGAGGCTGAAGAAGGAAGAGAAACGACGCCAGAAGGATGA

Upstream 100 bases:

>100_bases
ATCCGTCAGCGTCCTGTTCGACTAAACACAAAGCATGTTTAACCCTTCTTGTTTTAGGATAAAGTAGACAATAGATTCTA
ATTCAGGAAGGTGAAGAAAC

Downstream 100 bases:

>100_bases
TAGACGTAACCGTTTCGGTTACGTCTTTTGTAGTATCATGTACAGAGAGGAGCACGGCCATTGAAGCTGTTTGTCGGGCT
CGGAAACCCGGGCAAGGAGT

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MAIVLGAKERKDKKHSTLRRIRSQGGIPAVLYGKKVDNKMISISAADLEKALREGGRHSLVTLKVDGEDYSVLLREVQRD
PLRGELLHADFQAVDMSAEVDVDVEVRLVGEAPGVKDGGVLQQNLHELSIRVLPANIPPAIEVDISGLQVGDVITVGDVQ
TGGTFEINHEPSEVIATILPPQQEEEIHSGEQQEPGQPEAEEGRETTPEG

Sequences:

>Translated_210_residues
MAIVLGAKERKDKKHSTLRRIRSQGGIPAVLYGKKVDNKMISISAADLEKALREGGRHSLVTLKVDGEDYSVLLREVQRD
PLRGELLHADFQAVDMSAEVDVDVEVRLVGEAPGVKDGGVLQQNLHELSIRVLPANIPPAIEVDISGLQVGDVITVGDVQ
TGGTFEINHEPSEVIATILPPQQEEEIHSGEQQEPGQPEAEEGRETTPEG
>Mature_209_residues
AIVLGAKERKDKKHSTLRRIRSQGGIPAVLYGKKVDNKMISISAADLEKALREGGRHSLVTLKVDGEDYSVLLREVQRDP
LRGELLHADFQAVDMSAEVDVDVEVRLVGEAPGVKDGGVLQQNLHELSIRVLPANIPPAIEVDISGLQVGDVITVGDVQT
GGTFEINHEPSEVIATILPPQQEEEIHSGEQQEPGQPEAEEGRETTPEG

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_GEOTN (A4IJC8)

Other databases:

- EMBL:   CP000557
- RefSeq:   YP_001124177.1
- ProteinModelPortal:   A4IJC8
- SMR:   A4IJC8
- STRING:   A4IJC8
- GeneID:   4965171
- GenomeReviews:   CP000557_GR
- KEGG:   gtn:GTNG_0045
- NMPDR:   fig|420246.5.peg.45
- eggNOG:   COG1825
- HOGENOM:   HBG731986
- OMA:   LNIVRHE
- ProtClustDB:   PRK05618
- BioCyc:   GTHE420246:GTNG_0045-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 22756; Mature: 22625

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIVLGAKERKDKKHSTLRRIRSQGGIPAVLYGKKVDNKMISISAADLEKALREGGRHSL
CEEEECCHHHCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCCCEEE
VTLKVDGEDYSVLLREVQRDPLRGELLHADFQAVDMSAEVDVDVEVRLVGEAPGVKDGGV
EEEEECCCCHHHHHHHHHCCCCCCEEEECCCEEECCCCCCCCEEEEEEEECCCCCCCCCH
LQQNLHELSIRVLPANIPPAIEVDISGLQVGDVITVGDVQTGGTFEINHEPSEVIATILP
HHHHHHEEEEEEEECCCCCEEEEEECCEEECCEEEECCCCCCCEEEECCCHHHHEEECCC
PQQEEEIHSGEQQEPGQPEAEEGRETTPEG
CCCHHHHHCCCCCCCCCCCHHCCCCCCCCC
>Mature Secondary Structure 
AIVLGAKERKDKKHSTLRRIRSQGGIPAVLYGKKVDNKMISISAADLEKALREGGRHSL
EEEECCHHHCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCCCEEE
VTLKVDGEDYSVLLREVQRDPLRGELLHADFQAVDMSAEVDVDVEVRLVGEAPGVKDGGV
EEEEECCCCHHHHHHHHHCCCCCCEEEECCCEEECCCCCCCCEEEEEEEECCCCCCCCCH
LQQNLHELSIRVLPANIPPAIEVDISGLQVGDVITVGDVQTGGTFEINHEPSEVIATILP
HHHHHHEEEEEEEECCCCCEEEEEECCEEECCEEEECCCCCCCEEEECCCHHHHEEECCC
PQQEEEIHSGEQQEPGQPEAEEGRETTPEG
CCCHHHHHCCCCCCCCCCCHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA