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The map label for this gene is ybiR [C]

Identifier: 134299837

GI number: 134299837

Start: 2186709

End: 2187992

Strand: Reverse

Name: ybiR [C]

Synonym: Dred_1990

Alternate gene names: 134299837

Gene position: 2187992-2186709 (Counterclockwise)

Preceding gene: 134299838

Following gene: 134299836

Centisome position: 60.64

GC content: 41.12

Gene sequence:

>1284_bases
GTGGAAGGAAACAGCCAGGTGATTTTTGCCACAGCAGTATTTTTACTAACCTATGCCATTATCATTTCCGAAAAGATTCA
CAGGGCAGTGATAGCACTTTTGGGTGCGATGATTGTTATCGTTGGGGGGGTTCTTCAACAAGAGAAGGCCATAGAGGCAA
TTGATTTTAATACCATAGGCCTCTTGGTCGGCATGATGATAATCGTGGGTATTGCTAGAAATTCAGGGGTTTTTGAATAT
CTAGCGGTAAAGGCGGCCAAGAGCAGTAAAGGGGAACCCTTAGCTATACTCATATCATTGTCATTAATTACTGCATTGTT
GTCAGCTTTACTGGATAATGTAACAACTGTGTTACTAATTGTTCCAGTGACCTTTTCCATTGCAAAGTCTTTGGAAATAA
ATCCATCTCCTATTTTAATCTCAGAGGTTTTATCATCCAATATAGGTGGTACAGCAACCCTCATAGGTGACCCACCAAAT
ATTATGATTGGTTCTGCAACGGGCCTTGGGTTTATGGATTTTGTATTTAATCTAGCCCCGGTAATTATAGTTATTATGGC
TGTTACGGTGTTTCTTTTAAAGATGCTTTATAAAAAACAACTGGTAGTTCGCGAAGAATTAAAGCAAAACATTATGGCAT
TGAATCCCTTGGATGAGATAAAGGATGTTGTTTTATTAAAGAAATCATTATTTGTGATTGCATTAACCATAGGCGGGTTT
TTATTGCACCAATATGTACACTTAGAATCGGCAACAATTGCTCTGGGTGGAGCGGCGTTACTGTTGCTGATTACTGGAGA
TGAACCAGAACATGCCTTGGCAGCCGTAGAGTGGCCAGTAATTTTCTTCTTTGCCGGACTATTCATTTTGGTTGGCGCCC
TTGAAGAAGTAGGGGTCATTGAGTGGATTGCTAAGGAGGCCTTAAAACTGACCGGGGGAGAAATGCTTTCTACGGGTTTG
CTGATCCTATGGCTTTCAGCCATTGCCTCAGCCTTTGTGGATAATATTCCCTTTGTGGCCACCATGATTCCGTTAATTCA
AGATATGGGGAGATTAGGTGGTATCACCGACCTTAATCCCCTCTGGTGGTCTTTATCTCTGGGTGCCTGTCTAGGTGGCA
ATGGTACTATTATTGGTGCATCTGCAAACGTAGTAGTGGCAGGAATGGCGGAAAAACGAGGTTTAAAGTGGACCTTCATT
GGTTTTATGAAAGTTGCCTTTCCTCTGATGCTTGTATCAATTATTATATCGACCGTATATCTGTACTTCTTTTATTTGAC
ATAG

Upstream 100 bases:

>100_bases
TACAAGAAGATTTCGTTGACTGTTGGCACACCTGGAGTATAATTTCAGGTGTGTCAACATAAAAATGGCATCTAAATTAA
TCAAATTGAGGGGGATAACT

Downstream 100 bases:

>100_bases
TCATTTATAATCTGATGGCTCGAGGAGGCTTTCGGGTGCCATTAGGGGTGTTTACAAACCACATGGCGAGGAATTGTGAA
AAATAAAGCAAAGCATAATT

Product: citrate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MEGNSQVIFATAVFLLTYAIIISEKIHRAVIALLGAMIVIVGGVLQQEKAIEAIDFNTIGLLVGMMIIVGIARNSGVFEY
LAVKAAKSSKGEPLAILISLSLITALLSALLDNVTTVLLIVPVTFSIAKSLEINPSPILISEVLSSNIGGTATLIGDPPN
IMIGSATGLGFMDFVFNLAPVIIVIMAVTVFLLKMLYKKQLVVREELKQNIMALNPLDEIKDVVLLKKSLFVIALTIGGF
LLHQYVHLESATIALGGAALLLLITGDEPEHALAAVEWPVIFFFAGLFILVGALEEVGVIEWIAKEALKLTGGEMLSTGL
LILWLSAIASAFVDNIPFVATMIPLIQDMGRLGGITDLNPLWWSLSLGACLGGNGTIIGASANVVVAGMAEKRGLKWTFI
GFMKVAFPLMLVSIIISTVYLYFFYLT

Sequences:

>Translated_427_residues
MEGNSQVIFATAVFLLTYAIIISEKIHRAVIALLGAMIVIVGGVLQQEKAIEAIDFNTIGLLVGMMIIVGIARNSGVFEY
LAVKAAKSSKGEPLAILISLSLITALLSALLDNVTTVLLIVPVTFSIAKSLEINPSPILISEVLSSNIGGTATLIGDPPN
IMIGSATGLGFMDFVFNLAPVIIVIMAVTVFLLKMLYKKQLVVREELKQNIMALNPLDEIKDVVLLKKSLFVIALTIGGF
LLHQYVHLESATIALGGAALLLLITGDEPEHALAAVEWPVIFFFAGLFILVGALEEVGVIEWIAKEALKLTGGEMLSTGL
LILWLSAIASAFVDNIPFVATMIPLIQDMGRLGGITDLNPLWWSLSLGACLGGNGTIIGASANVVVAGMAEKRGLKWTFI
GFMKVAFPLMLVSIIISTVYLYFFYLT
>Mature_427_residues
MEGNSQVIFATAVFLLTYAIIISEKIHRAVIALLGAMIVIVGGVLQQEKAIEAIDFNTIGLLVGMMIIVGIARNSGVFEY
LAVKAAKSSKGEPLAILISLSLITALLSALLDNVTTVLLIVPVTFSIAKSLEINPSPILISEVLSSNIGGTATLIGDPPN
IMIGSATGLGFMDFVFNLAPVIIVIMAVTVFLLKMLYKKQLVVREELKQNIMALNPLDEIKDVVLLKKSLFVIALTIGGF
LLHQYVHLESATIALGGAALLLLITGDEPEHALAAVEWPVIFFFAGLFILVGALEEVGVIEWIAKEALKLTGGEMLSTGL
LILWLSAIASAFVDNIPFVATMIPLIQDMGRLGGITDLNPLWWSLSLGACLGGNGTIIGASANVVVAGMAEKRGLKWTFI
GFMKVAFPLMLVSIIISTVYLYFFYLT

Specific function: Unknown

COG id: COG1055

COG function: function code P; Na+/H+ antiporter NhaD and related arsenite permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Homo sapiens, GI157266326, Length=501, Percent_Identity=35.7285429141717, Blast_Score=250, Evalue=2e-66,
Organism=Escherichia coli, GI1787039, Length=349, Percent_Identity=25.7879656160458, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082277, Length=349, Percent_Identity=24.3553008595989, Blast_Score=69, Evalue=8e-13,
Organism=Drosophila melanogaster, GI19920704, Length=499, Percent_Identity=37.2745490981964, Blast_Score=259, Evalue=2e-69,
Organism=Drosophila melanogaster, GI24581759, Length=503, Percent_Identity=36.9781312127237, Blast_Score=259, Evalue=2e-69,
Organism=Drosophila melanogaster, GI28574683, Length=503, Percent_Identity=36.9781312127237, Blast_Score=259, Evalue=3e-69,
Organism=Drosophila melanogaster, GI28574681, Length=503, Percent_Identity=36.9781312127237, Blast_Score=259, Evalue=3e-69,
Organism=Drosophila melanogaster, GI28574685, Length=503, Percent_Identity=36.9781312127237, Blast_Score=259, Evalue=3e-69,
Organism=Drosophila melanogaster, GI28574678, Length=503, Percent_Identity=36.9781312127237, Blast_Score=259, Evalue=3e-69,
Organism=Drosophila melanogaster, GI45550608, Length=480, Percent_Identity=35.2083333333333, Blast_Score=209, Evalue=4e-54,
Organism=Drosophila melanogaster, GI221472711, Length=499, Percent_Identity=29.4589178356713, Blast_Score=198, Evalue=5e-51,
Organism=Drosophila melanogaster, GI24581764, Length=499, Percent_Identity=29.4589178356713, Blast_Score=197, Evalue=2e-50,
Organism=Drosophila melanogaster, GI85724998, Length=467, Percent_Identity=26.7665952890792, Blast_Score=161, Evalue=1e-39,
Organism=Drosophila melanogaster, GI62484377, Length=467, Percent_Identity=26.7665952890792, Blast_Score=160, Evalue=2e-39,
Organism=Drosophila melanogaster, GI24656008, Length=482, Percent_Identity=26.9709543568465, Blast_Score=142, Evalue=4e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000802
- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 45615; Mature: 45615

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGNSQVIFATAVFLLTYAIIISEKIHRAVIALLGAMIVIVGGVLQQEKAIEAIDFNTIG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LLVGMMIIVGIARNSGVFEYLAVKAAKSSKGEPLAILISLSLITALLSALLDNVTTVLLI
HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
VPVTFSIAKSLEINPSPILISEVLSSNIGGTATLIGDPPNIMIGSATGLGFMDFVFNLAP
HHHHHHHHHCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCEEEECCCCCHHHHHHHHHHH
VIIVIMAVTVFLLKMLYKKQLVVREELKQNIMALNPLDEIKDVVLLKKSLFVIALTIGGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHH
LLHQYVHLESATIALGGAALLLLITGDEPEHALAAVEWPVIFFFAGLFILVGALEEVGVI
HHHHHHHHCCHHEEECCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EWIAKEALKLTGGEMLSTGLLILWLSAIASAFVDNIPFVATMIPLIQDMGRLGGITDLNP
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCH
LWWSLSLGACLGGNGTIIGASANVVVAGMAEKRGLKWTFIGFMKVAFPLMLVSIIISTVY
HHHHHHHCEEECCCCEEEECCCCEEEEECHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHH
LYFFYLT
HHHHHCC
>Mature Secondary Structure
MEGNSQVIFATAVFLLTYAIIISEKIHRAVIALLGAMIVIVGGVLQQEKAIEAIDFNTIG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LLVGMMIIVGIARNSGVFEYLAVKAAKSSKGEPLAILISLSLITALLSALLDNVTTVLLI
HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
VPVTFSIAKSLEINPSPILISEVLSSNIGGTATLIGDPPNIMIGSATGLGFMDFVFNLAP
HHHHHHHHHCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCEEEECCCCCHHHHHHHHHHH
VIIVIMAVTVFLLKMLYKKQLVVREELKQNIMALNPLDEIKDVVLLKKSLFVIALTIGGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHH
LLHQYVHLESATIALGGAALLLLITGDEPEHALAAVEWPVIFFFAGLFILVGALEEVGVI
HHHHHHHHCCHHEEECCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EWIAKEALKLTGGEMLSTGLLILWLSAIASAFVDNIPFVATMIPLIQDMGRLGGITDLNP
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCH
LWWSLSLGACLGGNGTIIGASANVVVAGMAEKRGLKWTFIGFMKVAFPLMLVSIIISTVY
HHHHHHHCEEECCCCEEEECCCCEEEEECHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHH
LYFFYLT
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]