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The map label for this gene is ybiR [C]

Identifier: 134299700

GI number: 134299700

Start: 2025625

End: 2026899

Strand: Reverse

Name: ybiR [C]

Synonym: Dred_1846

Alternate gene names: 134299700

Gene position: 2026899-2025625 (Counterclockwise)

Preceding gene: 134299703

Following gene: 134299699

Centisome position: 56.18

GC content: 42.43

Gene sequence:

>1275_bases
TTGGGAAGTCAGTTTATCCTGGCATCAACATTTTTTATTCTAACCTATGCTTTTATTGTATCAGAGAAAATTAACCGGAC
CGTTGTTGCCCTGGCTGGGGCAGTGGTTGTGCTTTTCGCCGGCTTGGTAAGCCAGGAAAAGGCAATTCAATATATTGACT
GGAACACCATAGGTCTGCTGGTGGGAATGATGATTATAGTGGCCATTACACGAAGAACCGGTGTATTTGAGTATCTTGCT
ATCAAAGCTGCCATTTTAGCAAAGGGAGAACCTACGAAACTACTGGTTTCCTTATCAATTATCACAGCATTTGCTTCTGC
TTTTTTGGATAATGTCACTGCAGTACTGCTGGTGGTCCCTGTTACCTTCTCAATTTGTAAGCAATTACAGGTGAATCCTG
TTCCTTTTATCGTATCTGAGATTTTAGCCTGCAACATTGGAGGAACCGCCACGTTGATTGGTGACCCGCCCAATATTATG
ATCAGTGGCCCTGCAGGCTTGTCTTTTATGGATTTTATCTTTAATTTAGCTCCCATCGCGGTGGTTGTTTTTATCATTAC
AATATTGATATTACGCTTTGTTTACAGTAAGGAAATACAGGCAGCCCCAGAATTAATGGCTAAAATTATGAAATTTAACC
CTCAGGATGAGCTAAAGGATAGAAAACTCCTAACCAAATGCCTGCTAGCATTGGGGTTAACAATACTTGGTTTTGCGCTT
CATTCCATTCTTCATATGCCCACTGCAACAATTGCCCTTGGGGGAGCGGTGCTATTGCTTCTAATGACTAGAGAAGAACC
AGAACATGTACTGGAAGCCGTAGAATGGCCCACTATTTTCTTCTTTGTGGGATTGTTTGTGGTTGTGGGGTCTTTGGAAG
AGGCAGGAGTTATTCACTGGATAGCTGAATCTGCTTTACACTTAACGGGTGGTGAAATCGTAACTACCGGCTTTCTAATA
CTATGGCTTTCTGCCATTGCTTCAACCTTTGTTGATAACATCCCCTTTGTAGCAACAATGATCCCGCTTTTGCAGCAAAT
GGGTAAGATCGGTGGTATTGCAAATTTAGATCCCCTGTGGTGGTCCTTAGCCTTGGGGGCCTGCCTTGGTGGAAATGGCT
CACTGGTTGGGGCTGCTGCCAACGTAATTGTGGCCGGGATGGTTGAAAAAAGAGGCTATCATCTTGGTTTCCTGGCATTC
ATGAAAATAGCCTTCCCGTTGATGATTTTATCAATATTTTTAGCCATGATATATTTAGTAGTGTTTATTTATTGA

Upstream 100 bases:

>100_bases
TGACAACTATCCATATATGTACCTGTATAAGCATCTGAAAGTAATCAAACAATAACAACTAAAATGTTCTTTTCTATTAG
ATTAACTTGGGGGGATAGTT

Downstream 100 bases:

>100_bases
CTCCAACCCACAATCATAAATATTTATGTTAACAGGAGTACCCTCCCTGCCCAGCCAACATAATTAGACTATCGAAACCC
ACCCTATGTATGAGTGCACA

Product: citrate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 423

Protein sequence:

>424_residues
MGSQFILASTFFILTYAFIVSEKINRTVVALAGAVVVLFAGLVSQEKAIQYIDWNTIGLLVGMMIIVAITRRTGVFEYLA
IKAAILAKGEPTKLLVSLSIITAFASAFLDNVTAVLLVVPVTFSICKQLQVNPVPFIVSEILACNIGGTATLIGDPPNIM
ISGPAGLSFMDFIFNLAPIAVVVFIITILILRFVYSKEIQAAPELMAKIMKFNPQDELKDRKLLTKCLLALGLTILGFAL
HSILHMPTATIALGGAVLLLLMTREEPEHVLEAVEWPTIFFFVGLFVVVGSLEEAGVIHWIAESALHLTGGEIVTTGFLI
LWLSAIASTFVDNIPFVATMIPLLQQMGKIGGIANLDPLWWSLALGACLGGNGSLVGAAANVIVAGMVEKRGYHLGFLAF
MKIAFPLMILSIFLAMIYLVVFIY

Sequences:

>Translated_424_residues
MGSQFILASTFFILTYAFIVSEKINRTVVALAGAVVVLFAGLVSQEKAIQYIDWNTIGLLVGMMIIVAITRRTGVFEYLA
IKAAILAKGEPTKLLVSLSIITAFASAFLDNVTAVLLVVPVTFSICKQLQVNPVPFIVSEILACNIGGTATLIGDPPNIM
ISGPAGLSFMDFIFNLAPIAVVVFIITILILRFVYSKEIQAAPELMAKIMKFNPQDELKDRKLLTKCLLALGLTILGFAL
HSILHMPTATIALGGAVLLLLMTREEPEHVLEAVEWPTIFFFVGLFVVVGSLEEAGVIHWIAESALHLTGGEIVTTGFLI
LWLSAIASTFVDNIPFVATMIPLLQQMGKIGGIANLDPLWWSLALGACLGGNGSLVGAAANVIVAGMVEKRGYHLGFLAF
MKIAFPLMILSIFLAMIYLVVFIY
>Mature_423_residues
GSQFILASTFFILTYAFIVSEKINRTVVALAGAVVVLFAGLVSQEKAIQYIDWNTIGLLVGMMIIVAITRRTGVFEYLAI
KAAILAKGEPTKLLVSLSIITAFASAFLDNVTAVLLVVPVTFSICKQLQVNPVPFIVSEILACNIGGTATLIGDPPNIMI
SGPAGLSFMDFIFNLAPIAVVVFIITILILRFVYSKEIQAAPELMAKIMKFNPQDELKDRKLLTKCLLALGLTILGFALH
SILHMPTATIALGGAVLLLLMTREEPEHVLEAVEWPTIFFFVGLFVVVGSLEEAGVIHWIAESALHLTGGEIVTTGFLIL
WLSAIASTFVDNIPFVATMIPLLQQMGKIGGIANLDPLWWSLALGACLGGNGSLVGAAANVIVAGMVEKRGYHLGFLAFM
KIAFPLMILSIFLAMIYLVVFIY

Specific function: Unknown

COG id: COG1055

COG function: function code P; Na+/H+ antiporter NhaD and related arsenite permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Homo sapiens, GI157266326, Length=502, Percent_Identity=32.8685258964143, Blast_Score=237, Evalue=2e-62,
Organism=Escherichia coli, GI1787039, Length=375, Percent_Identity=26.4, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI87082277, Length=347, Percent_Identity=23.6311239193084, Blast_Score=69, Evalue=7e-13,
Organism=Drosophila melanogaster, GI19920704, Length=490, Percent_Identity=34.6938775510204, Blast_Score=246, Evalue=2e-65,
Organism=Drosophila melanogaster, GI24581759, Length=490, Percent_Identity=34.6938775510204, Blast_Score=246, Evalue=2e-65,
Organism=Drosophila melanogaster, GI28574683, Length=490, Percent_Identity=34.6938775510204, Blast_Score=246, Evalue=3e-65,
Organism=Drosophila melanogaster, GI28574681, Length=490, Percent_Identity=34.6938775510204, Blast_Score=246, Evalue=3e-65,
Organism=Drosophila melanogaster, GI28574685, Length=490, Percent_Identity=34.6938775510204, Blast_Score=246, Evalue=3e-65,
Organism=Drosophila melanogaster, GI28574678, Length=490, Percent_Identity=34.6938775510204, Blast_Score=246, Evalue=3e-65,
Organism=Drosophila melanogaster, GI221472711, Length=497, Percent_Identity=30.784708249497, Blast_Score=204, Evalue=7e-53,
Organism=Drosophila melanogaster, GI24581764, Length=497, Percent_Identity=30.9859154929577, Blast_Score=202, Evalue=4e-52,
Organism=Drosophila melanogaster, GI45550608, Length=469, Percent_Identity=32.6226012793177, Blast_Score=192, Evalue=3e-49,
Organism=Drosophila melanogaster, GI85724998, Length=468, Percent_Identity=26.7094017094017, Blast_Score=158, Evalue=5e-39,
Organism=Drosophila melanogaster, GI62484377, Length=468, Percent_Identity=26.7094017094017, Blast_Score=158, Evalue=9e-39,
Organism=Drosophila melanogaster, GI24656008, Length=467, Percent_Identity=25.2676659528908, Blast_Score=128, Evalue=8e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000802
- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 45691; Mature: 45560

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSQFILASTFFILTYAFIVSEKINRTVVALAGAVVVLFAGLVSQEKAIQYIDWNTIGLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHH
VGMMIIVAITRRTGVFEYLAIKAAILAKGEPTKLLVSLSIITAFASAFLDNVTAVLLVVP
HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTFSICKQLQVNPVPFIVSEILACNIGGTATLIGDPPNIMISGPAGLSFMDFIFNLAPIA
HHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHH
VVVFIITILILRFVYSKEIQAAPELMAKIMKFNPQDELKDRKLLTKCLLALGLTILGFAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
HSILHMPTATIALGGAVLLLLMTREEPEHVLEAVEWPTIFFFVGLFVVVGSLEEAGVIHW
HHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHH
IAESALHLTGGEIVTTGFLILWLSAIASTFVDNIPFVATMIPLLQQMGKIGGIANLDPLW
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHH
WSLALGACLGGNGSLVGAAANVIVAGMVEKRGYHLGFLAFMKIAFPLMILSIFLAMIYLV
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VFIY
HHCC
>Mature Secondary Structure 
GSQFILASTFFILTYAFIVSEKINRTVVALAGAVVVLFAGLVSQEKAIQYIDWNTIGLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHH
VGMMIIVAITRRTGVFEYLAIKAAILAKGEPTKLLVSLSIITAFASAFLDNVTAVLLVVP
HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTFSICKQLQVNPVPFIVSEILACNIGGTATLIGDPPNIMISGPAGLSFMDFIFNLAPIA
HHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHH
VVVFIITILILRFVYSKEIQAAPELMAKIMKFNPQDELKDRKLLTKCLLALGLTILGFAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
HSILHMPTATIALGGAVLLLLMTREEPEHVLEAVEWPTIFFFVGLFVVVGSLEEAGVIHW
HHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHH
IAESALHLTGGEIVTTGFLILWLSAIASTFVDNIPFVATMIPLLQQMGKIGGIANLDPLW
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHH
WSLALGACLGGNGSLVGAAANVIVAGMVEKRGYHLGFLAFMKIAFPLMILSIFLAMIYLV
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VFIY
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]