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The map label for this gene is rpoE [C]

Identifier: 134299682

GI number: 134299682

Start: 2007913

End: 2008449

Strand: Reverse

Name: rpoE [C]

Synonym: Dred_1828

Alternate gene names: 134299682

Gene position: 2008449-2007913 (Counterclockwise)

Preceding gene: 134299688

Following gene: 134299681

Centisome position: 55.66

GC content: 33.89

Gene sequence:

>537_bases
GTGAATAAGGAATTTAGTAAATTAATTTTTGAATTGTATTATGAGCCTGCCTTCCAAGCCGCTTATTTTTATTGTGGTGA
TGCCGCAATTTCTGAGGAGGCGGCACAAGAAGCAATCTATAAGGCAATTCAAAACATAGACCAACTAAGAGATCCAGAAA
AAATTGAGGCGTGGATAAAGAAAATCACAATAAATAATGTAAATAGTATATTAAATAAATATAAAAAAGTGGTTAGTATA
GAGCTAATTGGCCCAATTGTTGACTCTATAGAAAAGTCTCCGGAATATGTGGTAAGTTCGAAGGATACTATTTCTGCGGT
AAATAAAGCAATAGATACTCTAGACCCCGTTATGAAACAGATAATTCATCTTTATTACTATCAGGAAATGAAGGTAAAGG
ATATCTCTATTTTGATTCAAAAACCAGAGGGAACGGTTAAAACACTATTATATAGAGCTAGGATTCTTATCAAAAACCAT
TTAGTTAAAGAAGGGTACGTAATAGGTACCTCGGAAGGTGGGTTGAAGGTTGAGTGA

Upstream 100 bases:

>100_bases
AATCTAATAGTATTATTGTAAAAATATTAGATAAATTTACCAAAACCTCTCAGGGGGCTATTATGTCAATATTTAATAAG
ATTTTAGGCAATAAAAAAAG

Downstream 100 bases:

>100_bases
ACATAAATATACTTCCATTGATGAACTAATTAAAAAATCTCTTAAGGAACGAGCCCAAAAAGAAACTGACGTGGATATGG
ATTTAGCCTGGGAAAAGTTT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; DNA-Directed RNA Polymerase; ECF Family DNA-Directed RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma; DNA-Directed RNA Polymeracialized Sigma Subunit

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MNKEFSKLIFELYYEPAFQAAYFYCGDAAISEEAAQEAIYKAIQNIDQLRDPEKIEAWIKKITINNVNSILNKYKKVVSI
ELIGPIVDSIEKSPEYVVSSKDTISAVNKAIDTLDPVMKQIIHLYYYQEMKVKDISILIQKPEGTVKTLLYRARILIKNH
LVKEGYVIGTSEGGLKVE

Sequences:

>Translated_178_residues
MNKEFSKLIFELYYEPAFQAAYFYCGDAAISEEAAQEAIYKAIQNIDQLRDPEKIEAWIKKITINNVNSILNKYKKVVSI
ELIGPIVDSIEKSPEYVVSSKDTISAVNKAIDTLDPVMKQIIHLYYYQEMKVKDISILIQKPEGTVKTLLYRARILIKNH
LVKEGYVIGTSEGGLKVE
>Mature_178_residues
MNKEFSKLIFELYYEPAFQAAYFYCGDAAISEEAAQEAIYKAIQNIDQLRDPEKIEAWIKKITINNVNSILNKYKKVVSI
ELIGPIVDSIEKSPEYVVSSKDTISAVNKAIDTLDPVMKQIIHLYYYQEMKVKDISILIQKPEGTVKTLLYRARILIKNH
LVKEGYVIGTSEGGLKVE

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20297; Mature: 20297

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKEFSKLIFELYYEPAFQAAYFYCGDAAISEEAAQEAIYKAIQNIDQLRDPEKIEAWIK
CCHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
KITINNVNSILNKYKKVVSIELIGPIVDSIEKSPEYVVSSKDTISAVNKAIDTLDPVMKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHH
IIHLYYYQEMKVKDISILIQKPEGTVKTLLYRARILIKNHLVKEGYVIGTSEGGLKVE
HHHHHHHHHCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
>Mature Secondary Structure
MNKEFSKLIFELYYEPAFQAAYFYCGDAAISEEAAQEAIYKAIQNIDQLRDPEKIEAWIK
CCHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
KITINNVNSILNKYKKVVSIELIGPIVDSIEKSPEYVVSSKDTISAVNKAIDTLDPVMKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHH
IIHLYYYQEMKVKDISILIQKPEGTVKTLLYRARILIKNHLVKEGYVIGTSEGGLKVE
HHHHHHHHHCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA