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The map label for this gene is ytlD [H]

Identifier: 134299688

GI number: 134299688

Start: 2014033

End: 2014839

Strand: Reverse

Name: ytlD [H]

Synonym: Dred_1834

Alternate gene names: 134299688

Gene position: 2014839-2014033 (Counterclockwise)

Preceding gene: 134299689

Following gene: 134299682

Centisome position: 55.84

GC content: 41.51

Gene sequence:

>807_bases
ATGAACCCAAAACTTAATCTTTCTCCTGAGCGTCAGGCATATCTAAAACAAGTGAGACGTCGTAAAATAGCAGTTTTAAC
CACCCAACTTTTTATTCTAGTAGCTGTTTTTGTGCTATGGGAAATATCTGCTAAAATGCACTGGATAGACCCCTTTATTA
CCAGCCAGCCGTCTCGTATGATTACTACTTTAAAAAACCTGCATTATGATGGCCATCTTTACCTACATTTAGGTATAACC
ATTTGGGAAACCTTTATTGGATTTGCCGTAGGAACATTAGGCGGTATTTTAATTGCTATCATGCTCTGGTGGTCGGATTT
TCTGAATAAAGTATCCGAACCATACCTGGTGGTTCTTAACGCCTTACCTAAGGTGGCGCTGGGTCCTATTATCATTGTCT
GGCTTGGTAACGGCCAGCCTGCCATTATTGCCATGGCCCTGCTAATTTCTATTGTCGTTACCATTATCAGCCTGCTCAAC
GGGTTTTTAACCGTGGATCAAGACAAAATAAAATTATTAAAAACCTTCGGAGCAAATAAATATCAAATTTTATGTAAAGT
AATTCTCCCGGCCAGCCTGCCTAATATTATAGCTGCCCTTAAAGTAAATGTCGGTCTTTCCTGGGTAGGAGTTATTATGG
GCGAATTTCTTGTCTCGAAAGCCGGTCTTGGCTACCTTATAGTTTATGGCAGCCAGGTATTTAAACTGGATCTAGTTATG
ACTAGCGTCACTGTACTGATTGTTGCGGCCGCAGTCATGTACCTGGCGGTAGCCTATCTGGAGAAGAAGCTACTAAAGTG
GCAGTAG

Upstream 100 bases:

>100_bases
AATATAGAACTTATCAGGCCAAACCTGCCGCCACTGGAAAATAGGAAGGACGATCGCTTTCGCCACTATTTTGACCTTGT
GTGGAAGGAGTTGGAAATAG

Downstream 100 bases:

>100_bases
TACCATTGGCTGGCCCCATAAACAATGCTGGGAATCTTTATGCTTGCCCCTACAGTTGATAAAGCAATAAACATGGCCAG
GTAAGTTAGACGTCGAGTTG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MNPKLNLSPERQAYLKQVRRRKIAVLTTQLFILVAVFVLWEISAKMHWIDPFITSQPSRMITTLKNLHYDGHLYLHLGIT
IWETFIGFAVGTLGGILIAIMLWWSDFLNKVSEPYLVVLNALPKVALGPIIIVWLGNGQPAIIAMALLISIVVTIISLLN
GFLTVDQDKIKLLKTFGANKYQILCKVILPASLPNIIAALKVNVGLSWVGVIMGEFLVSKAGLGYLIVYGSQVFKLDLVM
TSVTVLIVAAAVMYLAVAYLEKKLLKWQ

Sequences:

>Translated_268_residues
MNPKLNLSPERQAYLKQVRRRKIAVLTTQLFILVAVFVLWEISAKMHWIDPFITSQPSRMITTLKNLHYDGHLYLHLGIT
IWETFIGFAVGTLGGILIAIMLWWSDFLNKVSEPYLVVLNALPKVALGPIIIVWLGNGQPAIIAMALLISIVVTIISLLN
GFLTVDQDKIKLLKTFGANKYQILCKVILPASLPNIIAALKVNVGLSWVGVIMGEFLVSKAGLGYLIVYGSQVFKLDLVM
TSVTVLIVAAAVMYLAVAYLEKKLLKWQ
>Mature_268_residues
MNPKLNLSPERQAYLKQVRRRKIAVLTTQLFILVAVFVLWEISAKMHWIDPFITSQPSRMITTLKNLHYDGHLYLHLGIT
IWETFIGFAVGTLGGILIAIMLWWSDFLNKVSEPYLVVLNALPKVALGPIIIVWLGNGQPAIIAMALLISIVVTIISLLN
GFLTVDQDKIKLLKTFGANKYQILCKVILPASLPNIIAALKVNVGLSWVGVIMGEFLVSKAGLGYLIVYGSQVFKLDLVM
TSVTVLIVAAAVMYLAVAYLEKKLLKWQ

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0600

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87081802, Length=238, Percent_Identity=23.9495798319328, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1786564, Length=247, Percent_Identity=23.4817813765182, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29801; Mature: 29801

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPKLNLSPERQAYLKQVRRRKIAVLTTQLFILVAVFVLWEISAKMHWIDPFITSQPSRM
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHCCCHHHH
ITTLKNLHYDGHLYLHLGITIWETFIGFAVGTLGGILIAIMLWWSDFLNKVSEPYLVVLN
HHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHH
ALPKVALGPIIIVWLGNGQPAIIAMALLISIVVTIISLLNGFLTVDQDKIKLLKTFGANK
HCCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHCCCH
YQILCKVILPASLPNIIAALKVNVGLSWVGVIMGEFLVSKAGLGYLIVYGSQVFKLDLVM
HHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
TSVTVLIVAAAVMYLAVAYLEKKLLKWQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNPKLNLSPERQAYLKQVRRRKIAVLTTQLFILVAVFVLWEISAKMHWIDPFITSQPSRM
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHCCCHHHH
ITTLKNLHYDGHLYLHLGITIWETFIGFAVGTLGGILIAIMLWWSDFLNKVSEPYLVVLN
HHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHH
ALPKVALGPIIIVWLGNGQPAIIAMALLISIVVTIISLLNGFLTVDQDKIKLLKTFGANK
HCCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHCCCH
YQILCKVILPASLPNIIAALKVNVGLSWVGVIMGEFLVSKAGLGYLIVYGSQVFKLDLVM
HHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
TSVTVLIVAAAVMYLAVAYLEKKLLKWQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]