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The map label for this gene is dcrA [H]

Identifier: 134299039

GI number: 134299039

Start: 1249728

End: 1250579

Strand: Reverse

Name: dcrA [H]

Synonym: Dred_1176

Alternate gene names: 134299039

Gene position: 1250579-1249728 (Counterclockwise)

Preceding gene: 134299045

Following gene: 134299038

Centisome position: 34.66

GC content: 42.02

Gene sequence:

>852_bases
TTGATTAAAGTGGGTATTGTAGGAGGTGGCCAAGGTGGCTCAGCAATGCTTCGCTTAATGTCCTCTCTCACTGATATCAC
TGTAATCGGTATAGCGGACATCAACGAAAATGCCCCTGCCTTTACAGTAGCCAAAGAATTAGGTATCCCTACGTTTTTAG
ATTTTAAACAACTCCTTCAGTCAGCCAATTTGGATGTTGTTTTAGATGTTACTGGTAATGCCTCCGTAAATCAAGCCATT
TTAGAACATAAACAAGCTACTACCCACTTGGCCGATCCTGTAATTTCTAAGCTTATGTACACCGTTGCCCGGGGACAGGA
GGAGTCGGCACAAGAACTGAAAGGTCAAGCACAGCAGCTAGCCTCGATGGCAGAAGAATTAAACAGTACTGTACACAGTG
TACCCTCGGCCATCAAGTCAGTGACTGGAGCATTAGAAACCCATTGTGAGAAATTAAATTCTGCCGTCTTCCAGGCAGAA
AAACACATTAATGATACCGATGAAGTGATTGAATTTATTAAAAAGGTTGCTGATCAAACAAAATTGCTTGGCCTTAATGC
AGCCATTGAGGCCGCCAGAGCAGGCAACCATGGCCGGGGCTTTGGTGTGGTAGCCAATGAAGTTCGAAAGTTAGCTGAGG
ATAGTGTTGTTTCTGCCAAAAAAATCAGTAATATTTTAGGAAACATAGAAGATTCTATGAAAACAATCATCCTTGGCATA
GATGAAACCGCAACTATTGCTCAAATGCAACAATCTACCACTGACAAAGTTGATGAGGCTACCAAGCAGTTAGGACAAAT
AGCAGATGAAATGAAGGTATTTGCCCATAAGCTATCAAACTTTGCTAGTTAA

Upstream 100 bases:

>100_bases
AATTTTATATCTTAAATATACAAACTTTTTTAATTGTATTGTAGGAAAATTTGTATAAAAAGAGAATAATTTTAGTATCG
TTAAAAAAGGGGGGTTTAGA

Downstream 100 bases:

>100_bases
TTTAGACAACCCCTAGGCTGATTCTTTTTTTAGAGCAGAATATTAACTTTTATTTTTTTACATAATAACTACTATGAAAA
GTCTTGCTGTTTTTTCATTA

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MIKVGIVGGGQGGSAMLRLMSSLTDITVIGIADINENAPAFTVAKELGIPTFLDFKQLLQSANLDVVLDVTGNASVNQAI
LEHKQATTHLADPVISKLMYTVARGQEESAQELKGQAQQLASMAEELNSTVHSVPSAIKSVTGALETHCEKLNSAVFQAE
KHINDTDEVIEFIKKVADQTKLLGLNAAIEAARAGNHGRGFGVVANEVRKLAEDSVVSAKKISNILGNIEDSMKTIILGI
DETATIAQMQQSTTDKVDEATKQLGQIADEMKVFAHKLSNFAS

Sequences:

>Translated_283_residues
MIKVGIVGGGQGGSAMLRLMSSLTDITVIGIADINENAPAFTVAKELGIPTFLDFKQLLQSANLDVVLDVTGNASVNQAI
LEHKQATTHLADPVISKLMYTVARGQEESAQELKGQAQQLASMAEELNSTVHSVPSAIKSVTGALETHCEKLNSAVFQAE
KHINDTDEVIEFIKKVADQTKLLGLNAAIEAARAGNHGRGFGVVANEVRKLAEDSVVSAKKISNILGNIEDSMKTIILGI
DETATIAQMQQSTTDKVDEATKQLGQIADEMKVFAHKLSNFAS
>Mature_283_residues
MIKVGIVGGGQGGSAMLRLMSSLTDITVIGIADINENAPAFTVAKELGIPTFLDFKQLLQSANLDVVLDVTGNASVNQAI
LEHKQATTHLADPVISKLMYTVARGQEESAQELKGQAQQLASMAEELNSTVHSVPSAIKSVTGALETHCEKLNSAVFQAE
KHINDTDEVIEFIKKVADQTKLLGLNAAIEAARAGNHGRGFGVVANEVRKLAEDSVVSAKKISNILGNIEDSMKTIILGI
DETATIAQMQQSTTDKVDEATKQLGQIADEMKVFAHKLSNFAS

Specific function: Mediates Taxis To The Sugars Ribose And Galactose VIa An Interaction With The Periplasmic Ribose- Or Galactose-Binding Proteins. Chemotactic-Signal Transducers Respond To Changes In The Concentration Of Attractants And Repellents In The Environment, Trans

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=101, Percent_Identity=46.5346534653465, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI2367378, Length=101, Percent_Identity=40.5940594059406, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788195, Length=130, Percent_Identity=39.2307692307692, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788194, Length=124, Percent_Identity=35.4838709677419, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789453, Length=124, Percent_Identity=34.6774193548387, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 30108; Mature: 30108

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKVGIVGGGQGGSAMLRLMSSLTDITVIGIADINENAPAFTVAKELGIPTFLDFKQLLQ
CEEEEEEECCCCHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHH
SANLDVVLDVTGNASVNQAILEHKQATTHLADPVISKLMYTVARGQEESAQELKGQAQQL
HCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
ASMAEELNSTVHSVPSAIKSVTGALETHCEKLNSAVFQAEKHINDTDEVIEFIKKVADQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
KLLGLNAAIEAARAGNHGRGFGVVANEVRKLAEDSVVSAKKISNILGNIEDSMKTIILGI
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
DETATIAQMQQSTTDKVDEATKQLGQIADEMKVFAHKLSNFAS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIKVGIVGGGQGGSAMLRLMSSLTDITVIGIADINENAPAFTVAKELGIPTFLDFKQLLQ
CEEEEEEECCCCHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHH
SANLDVVLDVTGNASVNQAILEHKQATTHLADPVISKLMYTVARGQEESAQELKGQAQQL
HCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
ASMAEELNSTVHSVPSAIKSVTGALETHCEKLNSAVFQAEKHINDTDEVIEFIKKVADQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
KLLGLNAAIEAARAGNHGRGFGVVANEVRKLAEDSVVSAKKISNILGNIEDSMKTIILGI
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
DETATIAQMQQSTTDKVDEATKQLGQIADEMKVFAHKLSNFAS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1548224 [H]