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The map label for this gene is yodJ [H]

Identifier: 126696159

GI number: 126696159

Start: 711985

End: 712533

Strand: Direct

Name: yodJ [H]

Synonym: P9301_08211

Alternate gene names: 126696159

Gene position: 711985-712533 (Clockwise)

Preceding gene: 126696157

Following gene: 126696160

Centisome position: 43.36

GC content: 34.43

Gene sequence:

>549_bases
ATGCCTCTTAATAATCTCAAATCTCAGGTTGAAAGAAATCATGATGCCAGAATTTTAGGCCACCTTCCCTACAACGAAGC
TCCTAAAGAGAAACTAGTTTTAATTGAGCCTAATATTGAAGTTCATATGGATATGCGCGATTCTCTACTAAAGATGAGAG
AAGAAGCCAAAAAGGATGGTATATATTTGATCTTCTTGAGTGGTTATAGATCAATAAATTTGCAAAAAGATATCTTTTAT
TCTTTAAAATCCATTAGAAATCAAGAAGCGGCAGAAAGAGCTAGAGTTTCAGCCCCCCCAGGGTATTCTGAACATAGTAC
AGGTTTTGCAATCGATATTGGTGATGCTAATCAGAGGGAGACAGACTTTGAACCAGACTTTGAAAATACTGATGCCTTTA
GATGGCTAATAAAAAATGCAGCTAAGTTTCACTTTAAGTTATCGTTCAACAAAGATAATAAATATATAGATTACGAACCC
TGGCATTGGAGATATGAGGGGTCAATTGAAGCATTAAAAGTTTTTGAAAGCTCAAATAGAAAATTATAA

Upstream 100 bases:

>100_bases
CCCAAATTCATCATTATTAAAAAAATTTCTAATATTTTCTCCATTTCTTTTTCTTATCTTTTCTGTCGTTGCATTGCGAT
TTATTAGAAATGTAGAATTA

Downstream 100 bases:

>100_bases
ATCTAATTGATTAATTTAATTATTCAATTAGATTATTTTTTTCAAAGTCTTAAAAAGAAAATTTTCATAATAAGCATACT
TTGAGTTAGCCTTAATAAAG

Product: putative carboxypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MPLNNLKSQVERNHDARILGHLPYNEAPKEKLVLIEPNIEVHMDMRDSLLKMREEAKKDGIYLIFLSGYRSINLQKDIFY
SLKSIRNQEAAERARVSAPPGYSEHSTGFAIDIGDANQRETDFEPDFENTDAFRWLIKNAAKFHFKLSFNKDNKYIDYEP
WHWRYEGSIEALKVFESSNRKL

Sequences:

>Translated_182_residues
MPLNNLKSQVERNHDARILGHLPYNEAPKEKLVLIEPNIEVHMDMRDSLLKMREEAKKDGIYLIFLSGYRSINLQKDIFY
SLKSIRNQEAAERARVSAPPGYSEHSTGFAIDIGDANQRETDFEPDFENTDAFRWLIKNAAKFHFKLSFNKDNKYIDYEP
WHWRYEGSIEALKVFESSNRKL
>Mature_181_residues
PLNNLKSQVERNHDARILGHLPYNEAPKEKLVLIEPNIEVHMDMRDSLLKMREEAKKDGIYLIFLSGYRSINLQKDIFYS
LKSIRNQEAAERARVSAPPGYSEHSTGFAIDIGDANQRETDFEPDFENTDAFRWLIKNAAKFHFKLSFNKDNKYIDYEPW
HWRYEGSIEALKVFESSNRKL

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 21383; Mature: 21252

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLNNLKSQVERNHDARILGHLPYNEAPKEKLVLIEPNIEVHMDMRDSLLKMREEAKKDG
CCHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCCCEEEECHHHHHHHHHHHHHHCC
IYLIFLSGYRSINLQKDIFYSLKSIRNQEAAERARVSAPPGYSEHSTGFAIDIGDANQRE
EEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCC
TDFEPDFENTDAFRWLIKNAAKFHFKLSFNKDNKYIDYEPWHWRYEGSIEALKVFESSNR
CCCCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCEECCCCCEEEECCCCEEEEEECCCCC
KL
CC
>Mature Secondary Structure 
PLNNLKSQVERNHDARILGHLPYNEAPKEKLVLIEPNIEVHMDMRDSLLKMREEAKKDG
CHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCCCEEEECHHHHHHHHHHHHHHCC
IYLIFLSGYRSINLQKDIFYSLKSIRNQEAAERARVSAPPGYSEHSTGFAIDIGDANQRE
EEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCC
TDFEPDFENTDAFRWLIKNAAKFHFKLSFNKDNKYIDYEPWHWRYEGSIEALKVFESSNR
CCCCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCEECCCCCEEEECCCCEEEEEECCCCC
KL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]