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The map label for this gene is pqrA [H]

Identifier: 126700813

GI number: 126700813

Start: 3738048

End: 3738968

Strand: Direct

Name: pqrA [H]

Synonym: CD3194

Alternate gene names: 126700813

Gene position: 3738048-3738968 (Clockwise)

Preceding gene: 126700811

Following gene: 126700814

Centisome position: 87.13

GC content: 30.62

Gene sequence:

>921_bases
ATGACAAATGCTAAAAGTAAAAAAGAATATCTAAATCGTATTTGCAAAGTGCAAGACTATATAGAAGAACATTTACATGA
ACCTCTTTCTCTTGATGAACTTTCTAATATAGCAGGTTTTTCAAAATTTCATTTTCATAGAATCTTCAAAGCAATAGAAA
AAGAAACTTTGGCACAATATGTAAATAGGCTAAAACTAGAAAATGCAACTGCTTTTCTTATTCATAGAACTGACATGACT
GTTACTGATATTGCACACTACTTTGGCTTTACTGATTCAGCAGTTTTCTCGAGAGCATTTAAAAATTACTATAAAATAAG
CCCTATAAAATATAGAAACAATTATAGCAAGAATTGCAAAGAACCATATAAAATTTCTCAGTACAATAGAAGCATATCAA
AACCTAAATGTAAGAATACTAGAGAGGTTAAAGGTGAAATTGAAATTCTAGAACTTGATAATATGAATACTATTTACACT
AGGTATACTGGTTCATATGGTAATCTAACCAGTACTTTCCCAAAACTTTTAGAACGGTTATTCACATATGCAAGTGAGCA
GAATCTACTTGGACTTGAAAACACACAAATATTAGCCATTTATCATGATAATCCACAATTTACACAGGAGCATCAATTAA
GGACTAGTATTTGCATGACTATTCCAGATAACATTGTTGTCAAAGAGAATGACAATCTTGGCAATATGATAATACCTTCT
GGAAAATATCTTGTGGGACATTTTGATATTTCAAAATCTGAATATAGTGATGCGTGGGATTTTATGTATAATGAATGGCT
ATCAAATGGTAATTATAAGCTACGTGCCTCCTTCCCTTTTGAAGTATATCTTAACAACCCACACAATCACCCTCAAAATA
GACACTTGGTCGATATATATTTACCTATAGAACCTTTTTAA

Upstream 100 bases:

>100_bases
ACGCTATCTTATTTATCATAAATTACAAAAACATAAAATTTTATTACTATATTGCTATAAATTAATTGATACACATTTTA
CACAATAAGGAGGGCTATAT

Downstream 100 bases:

>100_bases
TAACCTCACCTAATCTATTCTTGTATTAAGGATTAATATATCCCTATTTTACGGTTTGATAAAATTGATAAAATGAGGTG
AACCAATGAAAGAAATAAAA

Product: AraC family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MTNAKSKKEYLNRICKVQDYIEEHLHEPLSLDELSNIAGFSKFHFHRIFKAIEKETLAQYVNRLKLENATAFLIHRTDMT
VTDIAHYFGFTDSAVFSRAFKNYYKISPIKYRNNYSKNCKEPYKISQYNRSISKPKCKNTREVKGEIEILELDNMNTIYT
RYTGSYGNLTSTFPKLLERLFTYASEQNLLGLENTQILAIYHDNPQFTQEHQLRTSICMTIPDNIVVKENDNLGNMIIPS
GKYLVGHFDISKSEYSDAWDFMYNEWLSNGNYKLRASFPFEVYLNNPHNHPQNRHLVDIYLPIEPF

Sequences:

>Translated_306_residues
MTNAKSKKEYLNRICKVQDYIEEHLHEPLSLDELSNIAGFSKFHFHRIFKAIEKETLAQYVNRLKLENATAFLIHRTDMT
VTDIAHYFGFTDSAVFSRAFKNYYKISPIKYRNNYSKNCKEPYKISQYNRSISKPKCKNTREVKGEIEILELDNMNTIYT
RYTGSYGNLTSTFPKLLERLFTYASEQNLLGLENTQILAIYHDNPQFTQEHQLRTSICMTIPDNIVVKENDNLGNMIIPS
GKYLVGHFDISKSEYSDAWDFMYNEWLSNGNYKLRASFPFEVYLNNPHNHPQNRHLVDIYLPIEPF
>Mature_305_residues
TNAKSKKEYLNRICKVQDYIEEHLHEPLSLDELSNIAGFSKFHFHRIFKAIEKETLAQYVNRLKLENATAFLIHRTDMTV
TDIAHYFGFTDSAVFSRAFKNYYKISPIKYRNNYSKNCKEPYKISQYNRSISKPKCKNTREVKGEIEILELDNMNTIYTR
YTGSYGNLTSTFPKLLERLFTYASEQNLLGLENTQILAIYHDNPQFTQEHQLRTSICMTIPDNIVVKENDNLGNMIIPSG
KYLVGHFDISKSEYSDAWDFMYNEWLSNGNYKLRASFPFEVYLNNPHNHPQNRHLVDIYLPIEPF

Specific function: Regulatory factor of blood coagulation [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081928, Length=99, Percent_Identity=34.3434343434343, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1790857, Length=113, Percent_Identity=29.2035398230088, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1790497, Length=101, Percent_Identity=30.6930693069307, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35996; Mature: 35865

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNAKSKKEYLNRICKVQDYIEEHLHEPLSLDELSNIAGFSKFHFHRIFKAIEKETLAQY
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
VNRLKLENATAFLIHRTDMTVTDIAHYFGFTDSAVFSRAFKNYYKISPIKYRNNYSKNCK
HHHHHHCCCEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHEECCCEEECCCCCCCCC
EPYKISQYNRSISKPKCKNTREVKGEIEILELDNMNTIYTRYTGSYGNLTSTFPKLLERL
CCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHH
FTYASEQNLLGLENTQILAIYHDNPQFTQEHQLRTSICMTIPDNIVVKENDNLGNMIIPS
HHHCCCCCCEECCCCEEEEEEECCCCCCHHHHHHHHEEEECCCCEEEECCCCCCCEEECC
GKYLVGHFDISKSEYSDAWDFMYNEWLSNGNYKLRASFPFEVYLNNPHNHPQNRHLVDIY
CCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEECCCCCCCCCCEEEEEE
LPIEPF
ECCCCC
>Mature Secondary Structure 
TNAKSKKEYLNRICKVQDYIEEHLHEPLSLDELSNIAGFSKFHFHRIFKAIEKETLAQY
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
VNRLKLENATAFLIHRTDMTVTDIAHYFGFTDSAVFSRAFKNYYKISPIKYRNNYSKNCK
HHHHHHCCCEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHEECCCEEECCCCCCCCC
EPYKISQYNRSISKPKCKNTREVKGEIEILELDNMNTIYTRYTGSYGNLTSTFPKLLERL
CCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHH
FTYASEQNLLGLENTQILAIYHDNPQFTQEHQLRTSICMTIPDNIVVKENDNLGNMIIPS
HHHCCCCCCEECCCCEEEEEEECCCCCCHHHHHHHHEEEECCCCEEEECCCCCCCEEECC
GKYLVGHFDISKSEYSDAWDFMYNEWLSNGNYKLRASFPFEVYLNNPHNHPQNRHLVDIY
CCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEECCCCCCCCCCEEEEEE
LPIEPF
ECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7726514 [H]