| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is malR [H]
Identifier: 126700785
GI number: 126700785
Start: 3699428
End: 3699790
Strand: Direct
Name: malR [H]
Synonym: CD3166
Alternate gene names: 126700785
Gene position: 3699428-3699790 (Clockwise)
Preceding gene: 126700784
Following gene: 126700786
Centisome position: 86.23
GC content: 30.58
Gene sequence:
>363_bases TTGAAACTTCGTGATGAGTATACTTGCCCATTAGAACTAACACATGATATGATAAAAGGCAAATGGAAATCTATTATATT ATGGAGATTACGCATAGGACCAACTTCCTTATCAAAACTTGAAAAGGAAATCAATGGTATTAATCAAAAGATGTTACTTG AACAACTTAAAGAATTAATTGAATTTGGTCTTGTAGATAAAAAGACATATGAAGGTTACCCACTTAAAGTTGAATACTCA CTTACACCTATTCGAGGGAAACAAATATTGGATGCTTTGGCTATAATGCAAGATATAGGAATTAGCTTTATGTTGGATAA TGGTATGGAAGATATTCTTAAGGAAAAAGGTGTTTTAAAGTAA
Upstream 100 bases:
>100_bases AAGAATTAGATTCATGGGATATATCAAATAAAAAAGTTGAGTTTGTATATAAGCTTGCTTCAAAATGTATCTTGGCAAAG TAAAATGGAGGTGAACTTAT
Downstream 100 bases:
>100_bases ATAGATACCCACAAAAAAGTAAGTAATTTACCATTATTTTCAACTGGTATATAATTAAATTATAGATATATTCTATTAAT TTATTATAATAGGAGGTAAA
Product: transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 120; Mature: 120
Protein sequence:
>120_residues MKLRDEYTCPLELTHDMIKGKWKSIILWRLRIGPTSLSKLEKEINGINQKMLLEQLKELIEFGLVDKKTYEGYPLKVEYS LTPIRGKQILDALAIMQDIGISFMLDNGMEDILKEKGVLK
Sequences:
>Translated_120_residues MKLRDEYTCPLELTHDMIKGKWKSIILWRLRIGPTSLSKLEKEINGINQKMLLEQLKELIEFGLVDKKTYEGYPLKVEYS LTPIRGKQILDALAIMQDIGISFMLDNGMEDILKEKGVLK >Mature_120_residues MKLRDEYTCPLELTHDMIKGKWKSIILWRLRIGPTSLSKLEKEINGINQKMLLEQLKELIEFGLVDKKTYEGYPLKVEYS LTPIRGKQILDALAIMQDIGISFMLDNGMEDILKEKGVLK
Specific function: Potential regulator of the malBH genes [H]
COG id: COG1733
COG function: function code K; Predicted transcriptional regulators
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002577 - InterPro: IPR011991 [H]
Pfam domain/function: PF01638 DUF24 [H]
EC number: NA
Molecular weight: Translated: 13897; Mature: 13897
Theoretical pI: Translated: 8.43; Mature: 8.43
Prosite motif: PS51118 HTH_HXLR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 5.0 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLRDEYTCPLELTHDMIKGKWKSIILWRLRIGPTSLSKLEKEINGINQKMLLEQLKELI CCCCCCCCCCHHHHHHHHHCCHHHEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHH EFGLVDKKTYEGYPLKVEYSLTPIRGKQILDALAIMQDIGISFMLDNGMEDILKEKGVLK HHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCHHHHHHHCCCCC >Mature Secondary Structure MKLRDEYTCPLELTHDMIKGKWKSIILWRLRIGPTSLSKLEKEINGINQKMLLEQLKELI CCCCCCCCCCHHHHHHHHHCCHHHEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHH EFGLVDKKTYEGYPLKVEYSLTPIRGKQILDALAIMQDIGISFMLDNGMEDILKEKGVLK HHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11882720 [H]