Definition Clostridium difficile 630 chromosome, complete genome.
Accession NC_009089
Length 4,290,252

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The map label for this gene is yxkA [H]

Identifier: 126700786

GI number: 126700786

Start: 3699896

End: 3700393

Strand: Direct

Name: yxkA [H]

Synonym: CD3167

Alternate gene names: 126700786

Gene position: 3699896-3700393 (Clockwise)

Preceding gene: 126700785

Following gene: 126700787

Centisome position: 86.24

GC content: 34.54

Gene sequence:

>498_bases
ATGAAAGTAACTAGTACAGGTATAGTAAATGGTGTTATAGAAGATAAATACGGTAAAAGAGGAACTCAGTTCAATGAAGG
TGGTATGCCTACATATTCACTACCTCTAAAGTTTGAAGATGCTCCAAAGAATACAGTATCCTTTGCTGTATTTTTAGAAG
ATAAAGACTCTGTTCCTGTATGTGGGTTTGCATGGATACATTGGTTAGCTGTAAATATAACAAAAGATGAGTTAAATGAA
AATGAAAGTGTAACAGCTACTGATTTTGTACAAGGGACTACTAGTTGGCATGGTAAACTAGGAGGTCTTGACAGATTAGA
GGCCAGTGTATATGGTGGAATGGCTCCTCCAGACAGACCTCATGTCTATGAAATACATGTATTTGCACTTGATACTATCC
TTGACCTTGAAAAAGGATTCTATATGAATGAATTTTTCAAAGCTATTGAAGGGCATGTTTTAGATACATTTACACTAAAA
GGAAGTTATTCTAATTAA

Upstream 100 bases:

>100_bases
TACCCACAAAAAAGTAAGTAATTTACCATTATTTTCAACTGGTATATAATTAAATTATAGATATATTCTATTAATTTATT
ATAATAGGAGGTAAATTATT

Downstream 100 bases:

>100_bases
TTAGGTTGACTATAGCTAATCATTAATTAAATGCTACATTTAATTGATGATTAGCTTAATTGTTATTAGAATATTTTCTG
CACTTTATCTTAATATATAT

Product: phosphatidylethanolamine-binding regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MKVTSTGIVNGVIEDKYGKRGTQFNEGGMPTYSLPLKFEDAPKNTVSFAVFLEDKDSVPVCGFAWIHWLAVNITKDELNE
NESVTATDFVQGTTSWHGKLGGLDRLEASVYGGMAPPDRPHVYEIHVFALDTILDLEKGFYMNEFFKAIEGHVLDTFTLK
GSYSN

Sequences:

>Translated_165_residues
MKVTSTGIVNGVIEDKYGKRGTQFNEGGMPTYSLPLKFEDAPKNTVSFAVFLEDKDSVPVCGFAWIHWLAVNITKDELNE
NESVTATDFVQGTTSWHGKLGGLDRLEASVYGGMAPPDRPHVYEIHVFALDTILDLEKGFYMNEFFKAIEGHVLDTFTLK
GSYSN
>Mature_165_residues
MKVTSTGIVNGVIEDKYGKRGTQFNEGGMPTYSLPLKFEDAPKNTVSFAVFLEDKDSVPVCGFAWIHWLAVNITKDELNE
NESVTATDFVQGTTSWHGKLGGLDRLEASVYGGMAPPDRPHVYEIHVFALDTILDLEKGFYMNEFFKAIEGHVLDTFTLK
GSYSN

Specific function: Unknown

COG id: COG1881

COG function: function code R; Phospholipid-binding protein

Gene ontology:

Cell location: Periplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008914
- InterPro:   IPR005247 [H]

Pfam domain/function: PF01161 PBP [H]

EC number: NA

Molecular weight: Translated: 18333; Mature: 18333

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVTSTGIVNGVIEDKYGKRGTQFNEGGMPTYSLPLKFEDAPKNTVSFAVFLEDKDSVPV
CCCCCCCEEECEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCCCC
CGFAWIHWLAVNITKDELNENESVTATDFVQGTTSWHGKLGGLDRLEASVYGGMAPPDRP
HHHHEEEEEEEEEEHHHCCCCCCEEEEHEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
HVYEIHVFALDTILDLEKGFYMNEFFKAIEGHVLDTFTLKGSYSN
CEEEEEEEEEEHHHHHHCCCCHHHHHHHHCCCEEEEEEECCCCCC
>Mature Secondary Structure
MKVTSTGIVNGVIEDKYGKRGTQFNEGGMPTYSLPLKFEDAPKNTVSFAVFLEDKDSVPV
CCCCCCCEEECEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCCCC
CGFAWIHWLAVNITKDELNENESVTATDFVQGTTSWHGKLGGLDRLEASVYGGMAPPDRP
HHHHEEEEEEEEEEHHHCCCCCCEEEEHEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
HVYEIHVFALDTILDLEKGFYMNEFFKAIEGHVLDTFTLKGSYSN
CEEEEEEEEEEHHHHHHCCCCHHHHHHHHCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8978088; 8969509; 9384377 [H]