| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126699462
Identifier: 126699462
GI number: 126699462
Start: 2143794
End: 2144657
Strand: Direct
Name: 126699462
Synonym: CD1853
Alternate gene names: NA
Gene position: 2143794-2144657 (Clockwise)
Preceding gene: 126699461
Following gene: 126699463
Centisome position: 49.97
GC content: 37.38
Gene sequence:
>864_bases ATGTTTGGGATATTCGACAAAATAGAGGAGTTTTTCAAAGAGTTTCTATTAGGCGGTATCCAAGCAAACTTAGAGTCTAT GTTTCTTGACATCAACGATAAAGTTGGTGCGATTGCAACGGATGTAGGAAAGACACCGATGGGGTGGAACGGACAGGTCT TCAGTTTTATTAAAAGCATTAACGATTCCGTTATCATCCCCATAGCGGGGCTAATCATAACGGCAGTCCTTTGTATCGAG CTTATCAATATGGTTATGCAAAAGAACAATATGCACGATACAGATACGTTTGATTTTTTTAAATACATCATAAAGATGTG GATTGCCGTATGGTTAGTATCTCATGCCTTTGAGTTTTCAATGGCAGTTTTTGATGTAGCTCAGCATATGGTTAATAAAG CAGCAGGAGTTATAAACACATCAGCAACTGTTTCCGGAAATCAGATTGTAGCAATGATTGATTCTCTAAAAGACAAAGGT CTTGGAGAGCTTGTGATGATACTCTTTGAAACCTCTCTCATAAAGGTAGCTATACAGGTTATTTCCATTGTGATAATGCT TGTGGTTTATGGAAGAATGTTTGAGATTTATATTTACTCATCGGTTTCAGCCATTCCATTTGCCACAATGGGAAACAAAG AGTGGGGACAGATTGGAACAAACTATATCAAAGGATTGTTTGCCATAGGTTTACAAGGACTCTTTTTAATGGTTTGTCTT GGAATATACGCAGTATTAGTTAAGACAATAAAGATAACAGACATACACACAAGTACCTTTACGATACTTGGATATGCGGT TTTGCTAGGGTTAATGATGTTAAAGAGCGGAACACTGGCCAAAAGCGTATTAAATGCACACTAA
Upstream 100 bases:
>100_bases ATCAAGCAACTTATGGCTGGAGGTGGCATAGTACTTATCGGATTAAAGCTGATTCCACTTCTTGCAAATGTACTCAGATA AGAAGAAAAGGAGAAACTAA
Downstream 100 bases:
>100_bases AAGAAAGGAAGGGTAATATGAACAAAAGAAAAACAGTATTTATAGTAGTAATTGGAGCAGGTATTATGGTGGTGATAGAT AGGATCAGACTTCACAGCAA
Product: conjugative transposon membrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 287; Mature: 287
Protein sequence:
>287_residues MFGIFDKIEEFFKEFLLGGIQANLESMFLDINDKVGAIATDVGKTPMGWNGQVFSFIKSINDSVIIPIAGLIITAVLCIE LINMVMQKNNMHDTDTFDFFKYIIKMWIAVWLVSHAFEFSMAVFDVAQHMVNKAAGVINTSATVSGNQIVAMIDSLKDKG LGELVMILFETSLIKVAIQVISIVIMLVVYGRMFEIYIYSSVSAIPFATMGNKEWGQIGTNYIKGLFAIGLQGLFLMVCL GIYAVLVKTIKITDIHTSTFTILGYAVLLGLMMLKSGTLAKSVLNAH
Sequences:
>Translated_287_residues MFGIFDKIEEFFKEFLLGGIQANLESMFLDINDKVGAIATDVGKTPMGWNGQVFSFIKSINDSVIIPIAGLIITAVLCIE LINMVMQKNNMHDTDTFDFFKYIIKMWIAVWLVSHAFEFSMAVFDVAQHMVNKAAGVINTSATVSGNQIVAMIDSLKDKG LGELVMILFETSLIKVAIQVISIVIMLVVYGRMFEIYIYSSVSAIPFATMGNKEWGQIGTNYIKGLFAIGLQGLFLMVCL GIYAVLVKTIKITDIHTSTFTILGYAVLLGLMMLKSGTLAKSVLNAH >Mature_287_residues MFGIFDKIEEFFKEFLLGGIQANLESMFLDINDKVGAIATDVGKTPMGWNGQVFSFIKSINDSVIIPIAGLIITAVLCIE LINMVMQKNNMHDTDTFDFFKYIIKMWIAVWLVSHAFEFSMAVFDVAQHMVNKAAGVINTSATVSGNQIVAMIDSLKDKG LGELVMILFETSLIKVAIQVISIVIMLVVYGRMFEIYIYSSVSAIPFATMGNKEWGQIGTNYIKGLFAIGLQGLFLMVCL GIYAVLVKTIKITDIHTSTFTILGYAVLLGLMMLKSGTLAKSVLNAH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31629; Mature: 31629
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 5.9 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 5.9 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFGIFDKIEEFFKEFLLGGIQANLESMFLDINDKVGAIATDVGKTPMGWNGQVFSFIKSI CCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHCCCCCCCCCHHHHHHHHHC NDSVIIPIAGLIITAVLCIELINMVMQKNNMHDTDTFDFFKYIIKMWIAVWLVSHAFEFS CCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH MAVFDVAQHMVNKAAGVINTSATVSGNQIVAMIDSLKDKGLGELVMILFETSLIKVAIQV HHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH ISIVIMLVVYGRMFEIYIYSSVSAIPFATMGNKEWGQIGTNYIKGLFAIGLQGLFLMVCL HHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GIYAVLVKTIKITDIHTSTFTILGYAVLLGLMMLKSGTLAKSVLNAH HHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCC >Mature Secondary Structure MFGIFDKIEEFFKEFLLGGIQANLESMFLDINDKVGAIATDVGKTPMGWNGQVFSFIKSI CCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHCCCCCCCCCHHHHHHHHHC NDSVIIPIAGLIITAVLCIELINMVMQKNNMHDTDTFDFFKYIIKMWIAVWLVSHAFEFS CCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH MAVFDVAQHMVNKAAGVINTSATVSGNQIVAMIDSLKDKGLGELVMILFETSLIKVAIQV HHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH ISIVIMLVVYGRMFEIYIYSSVSAIPFATMGNKEWGQIGTNYIKGLFAIGLQGLFLMVCL HHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GIYAVLVKTIKITDIHTSTFTILGYAVLLGLMMLKSGTLAKSVLNAH HHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA