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The map label for this gene is ypsC [H]

Identifier: 126699389

GI number: 126699389

Start: 2060934

End: 2062082

Strand: Direct

Name: ypsC [H]

Synonym: CD1780

Alternate gene names: 126699389

Gene position: 2060934-2062082 (Clockwise)

Preceding gene: 126699388

Following gene: 126699390

Centisome position: 48.04

GC content: 30.64

Gene sequence:

>1149_bases
ATGAAAAATTATACGTTAATATCGCCATGTTTTTTTGGAATGGAAAAAATGCTGGCTAGAGAGATTACTAATTTAGGATA
TGAAATAATAAAAACAGAAGATGGAAGAATAACATATAAAACTGATGAGTTTGGAATAGCAAAGTCAAACATGTGGTTGA
GATGTGCTGAAAGAGTACATCTTAAAATTGCTGAATTTGAGGCAAAAAGCTTTGATGAATTATTTGAAAATACAAAAAGA
ATAAACTGGTCTAGATATATACCTTATGGAGCTCAATTTCCTATATCAAAAGCTTCCTCTATAAAATCAAAATTATACAG
TACACCAGATGTACAAGCCATAGTAAAAAAGGCTATAGTAGAAAGCTTAAAGAAAAGTTATTTGGAGGATGGTTTGCTTA
AAGAAGATAAGGAGAAATACCCTATTTTTGTATTTATACACAAAGACAAAGTAACCATTTCTATAGATACAACAGGAGAT
GCTTTGCATAAGAGAGGATATAGAGAAAAGGCAAATAAAGCTCCAATAAGAGAGACTTTAGCTGCTGGGCTTATTTATTT
AACTCCCTGGAAAGCAGGTAGAGTTTTAGTAGACCCTATGTGTGGTTCTGGTACTATATTGATTGAAGCTGCTATGATTG
GTATAAATATGGCACCTGGCTTAAATAGAGAGTTTATATCAGAAAAGTGGAGAACTCTTGATAAGAAAATATGGTGGGAT
GTAAGAAAAGATGCTTTTAATAAGATAGATAATGAATCTAAATTTAAGATTTATGGATATGATATAGATGAAGAATCTAT
AGATATAGCTAGAGAAAATGCTGAAATAGCAGGTGTAGATGAATATATAGAGTTTAATGTAGGAGATGCAACTCAATTTA
AAAGTGAAGATGAGTTTGGATTTATAATCACTAATCCTCCTTACGGAGAAAGATTAGAAGATAAAGACAGTGTTAAACAG
TTGTATAAGGAGCTTGGTTATGCATTTAGAAAATTAAAAAATTGGTCGTATTATTTGATAACTTCTTATGAAGACTTTGA
ATATGAGTTTGGGCAAAAAGCAGACAAAAAAAGAAAATTGTATAATGGTATGTTAAAAACTAACTTTTTCCAATATCCGG
GTCCTAAGCCTCCTAGAAATAATAAATAA

Upstream 100 bases:

>100_bases
AGATATGTCAGGATATAAAATGGGAAGTATGAATTTAAATGTGTAGATTATTTTAAAAATAAATAAGTTTTATAGTTAAT
ATAAGGAAACAGGAGGTTTT

Downstream 100 bases:

>100_bases
GTTTTACATGATTTATTTGTAAAATATAAAATTTTATTAAAATAAGTAAAACATTATGATGCCTTGAAACGTCTAATTAT
TGTGAGGAGATTTTTGTGAA

Product: methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MKNYTLISPCFFGMEKMLAREITNLGYEIIKTEDGRITYKTDEFGIAKSNMWLRCAERVHLKIAEFEAKSFDELFENTKR
INWSRYIPYGAQFPISKASSIKSKLYSTPDVQAIVKKAIVESLKKSYLEDGLLKEDKEKYPIFVFIHKDKVTISIDTTGD
ALHKRGYREKANKAPIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWD
VRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQ
LYKELGYAFRKLKNWSYYLITSYEDFEYEFGQKADKKRKLYNGMLKTNFFQYPGPKPPRNNK

Sequences:

>Translated_382_residues
MKNYTLISPCFFGMEKMLAREITNLGYEIIKTEDGRITYKTDEFGIAKSNMWLRCAERVHLKIAEFEAKSFDELFENTKR
INWSRYIPYGAQFPISKASSIKSKLYSTPDVQAIVKKAIVESLKKSYLEDGLLKEDKEKYPIFVFIHKDKVTISIDTTGD
ALHKRGYREKANKAPIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWD
VRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQ
LYKELGYAFRKLKNWSYYLITSYEDFEYEFGQKADKKRKLYNGMLKTNFFQYPGPKPPRNNK
>Mature_382_residues
MKNYTLISPCFFGMEKMLAREITNLGYEIIKTEDGRITYKTDEFGIAKSNMWLRCAERVHLKIAEFEAKSFDELFENTKR
INWSRYIPYGAQFPISKASSIKSKLYSTPDVQAIVKKAIVESLKKSYLEDGLLKEDKEKYPIFVFIHKDKVTISIDTTGD
ALHKRGYREKANKAPIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWD
VRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQ
LYKELGYAFRKLKNWSYYLITSYEDFEYEFGQKADKKRKLYNGMLKTNFFQYPGPKPPRNNK

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=339, Percent_Identity=34.5132743362832, Blast_Score=202, Evalue=2e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 44398; Mature: 44398

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNYTLISPCFFGMEKMLAREITNLGYEIIKTEDGRITYKTDEFGIAKSNMWLRCAERVH
CCCCEEECHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHE
LKIAEFEAKSFDELFENTKRINWSRYIPYGAQFPISKASSIKSKLYSTPDVQAIVKKAIV
EEEEHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
ESLKKSYLEDGLLKEDKEKYPIFVFIHKDKVTISIDTTGDALHKRGYREKANKAPIRETL
HHHHHHHHHCCCCCCCCCCCCEEEEEECCEEEEEEECCCHHHHHCCCHHHHCCCHHHHHH
AAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWD
HCCEEEEECCCCCCEEECCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
VRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFG
HHHHHHHHCCCCCCEEEEEECCCCCCHHHHHCCCCCCCCCHHEEECCCCCCCCCCCCCCE
FIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYEDFEYEFGQKADKKRKL
EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHCCCHHHHHHH
YNGMLKTNFFQYPGPKPPRNNK
HHHHHHCCCEECCCCCCCCCCC
>Mature Secondary Structure
MKNYTLISPCFFGMEKMLAREITNLGYEIIKTEDGRITYKTDEFGIAKSNMWLRCAERVH
CCCCEEECHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHE
LKIAEFEAKSFDELFENTKRINWSRYIPYGAQFPISKASSIKSKLYSTPDVQAIVKKAIV
EEEEHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
ESLKKSYLEDGLLKEDKEKYPIFVFIHKDKVTISIDTTGDALHKRGYREKANKAPIRETL
HHHHHHHHHCCCCCCCCCCCCEEEEEECCEEEEEEECCCHHHHHCCCHHHHCCCHHHHHH
AAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWD
HCCEEEEECCCCCCEEECCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
VRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFG
HHHHHHHHCCCCCCEEEEEECCCCCCHHHHHCCCCCCCCCHHEEECCCCCCCCCCCCCCE
FIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYEDFEYEFGQKADKKRKL
EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHCCCHHHHHHH
YNGMLKTNFFQYPGPKPPRNNK
HHHHHHCCCEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]