| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126699390
Identifier: 126699390
GI number: 126699390
Start: 2062226
End: 2063614
Strand: Direct
Name: 126699390
Synonym: CD1781
Alternate gene names: NA
Gene position: 2062226-2063614 (Clockwise)
Preceding gene: 126699389
Following gene: 126699391
Centisome position: 48.07
GC content: 26.78
Gene sequence:
>1389_bases ATGAAAGTGTTAAAGCTTATTACTGTAGTAGCCCTGATGATGTTATTTGTTACTGGATGTAATATAAAAACTGAATCTCC AGAACAATTAGCGAAGATACCTGACTATGATGATACAAAAAAAGTATTGTATGATGGTATTGACCAGTTACTAAAACCAG ATTCATCTATGATATTGCCTTCTAATACAAAAGAAGTAGGAAAAATAAATAAGGTAGATTTAAACAGCGATGGAATTGAT GAATTAGTAGTATTTGAACAAAAAGAAGATTTAAGTAATAATGTGAGTCAGGTAGGGTTTGTAACCTTGAGTTACAATGG AGAAAAATACGTACTTGGAGACCATTTTTTAGAAAATGGCGAATCAATAGAATATGCTAATTTTTATGATTTGGACTCAG ATGGATATAAGGAAGTTATCTTATTGGTTAAATCCAAAGACAAAACGAATATGCATATATATAAAGTAGTAGATAATGAA ATAACAAAAATATATGACTTGGATGCATCATGGCTTCAAAATAAAGAAGATTTTAATGACATGAAAGTAAAAATTGGATA TATAGATGGAGATGACAAGTTAGACATATTGATGCTTCATTTGAATAATAAGACTAATGAAATGTTTGCAAGTGTTGCAA ATTTTGATGGGAAAATGAAAATCAAAGATTCTGTTAAGTTTGAAAATGTAAAAAACTTAAGTGAATTATATATAACATTA GGTAATGTTGCTTCATCTGTTGGAAATTCTTCTGCAGCTATAAAAGGTATTGTACTTGATATTCCTATATTGAAAGATAA TAACTATATTACGCAGATACTTTATATGAAAGATGGGAAAATTAACAAAGCTTTTAGTGATTATGATAAAACTATTACTA AATCTTATTATATACCTGTAGATGATATTGACAAAGATAAGATTATAGAAATACCTATAGTTGCAGGCAGTACAGGTAAT AATAAAAATACTTATAGTTCTAAATCATCTGCAACTATAAGTTGGTATAGATGGAATGGAAAAGAAGGTGCTGACTCAAG TTTAATATTTACAAGTCAGATATATTATAATTATAAATATAATTTTAAATTATTTATTCCAAATAATTTATTTGATAAAA TACTTGTTGAACAGGAATTTGTTGGAGAAAAAGCAGTATTTAAATTTTACTATTTTGACTATTCAGACCGTAAGAATTTA TTTAATATAGTAGTAGAGAGTAAAAATAAACTTGAAGATAGAAAAAATACAGGTACTCAAAATTCTATTGTACTTCAAGA GAGCGATGAATATACTTTCTTACTAGTTGTAAACAATGCAAATGAAATGGATAAGCTAGATATGACTATAGACGCATTAA AAGAATATTTCTCATTAATATATGGTTAA
Upstream 100 bases:
>100_bases AAGTAAAACATTATGATGCCTTGAAACGTCTAATTATTGTGAGGAGATTTTTGTGAACAAATTTAAAGATTTAAAGATTT ATAGGATTAGGAGGAGTTAA
Downstream 100 bases:
>100_bases TATTATACTCAATTGGAGGTTTTATTTTATGAAGGAAAAGATACTTATACTAGAAGATGAAATTGGTATTAGAAGTTTTG TTAGTATAAACTTAAAAAGG
Product: lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 462; Mature: 462
Protein sequence:
>462_residues MKVLKLITVVALMMLFVTGCNIKTESPEQLAKIPDYDDTKKVLYDGIDQLLKPDSSMILPSNTKEVGKINKVDLNSDGID ELVVFEQKEDLSNNVSQVGFVTLSYNGEKYVLGDHFLENGESIEYANFYDLDSDGYKEVILLVKSKDKTNMHIYKVVDNE ITKIYDLDASWLQNKEDFNDMKVKIGYIDGDDKLDILMLHLNNKTNEMFASVANFDGKMKIKDSVKFENVKNLSELYITL GNVASSVGNSSAAIKGIVLDIPILKDNNYITQILYMKDGKINKAFSDYDKTITKSYYIPVDDIDKDKIIEIPIVAGSTGN NKNTYSSKSSATISWYRWNGKEGADSSLIFTSQIYYNYKYNFKLFIPNNLFDKILVEQEFVGEKAVFKFYYFDYSDRKNL FNIVVESKNKLEDRKNTGTQNSIVLQESDEYTFLLVVNNANEMDKLDMTIDALKEYFSLIYG
Sequences:
>Translated_462_residues MKVLKLITVVALMMLFVTGCNIKTESPEQLAKIPDYDDTKKVLYDGIDQLLKPDSSMILPSNTKEVGKINKVDLNSDGID ELVVFEQKEDLSNNVSQVGFVTLSYNGEKYVLGDHFLENGESIEYANFYDLDSDGYKEVILLVKSKDKTNMHIYKVVDNE ITKIYDLDASWLQNKEDFNDMKVKIGYIDGDDKLDILMLHLNNKTNEMFASVANFDGKMKIKDSVKFENVKNLSELYITL GNVASSVGNSSAAIKGIVLDIPILKDNNYITQILYMKDGKINKAFSDYDKTITKSYYIPVDDIDKDKIIEIPIVAGSTGN NKNTYSSKSSATISWYRWNGKEGADSSLIFTSQIYYNYKYNFKLFIPNNLFDKILVEQEFVGEKAVFKFYYFDYSDRKNL FNIVVESKNKLEDRKNTGTQNSIVLQESDEYTFLLVVNNANEMDKLDMTIDALKEYFSLIYG >Mature_462_residues MKVLKLITVVALMMLFVTGCNIKTESPEQLAKIPDYDDTKKVLYDGIDQLLKPDSSMILPSNTKEVGKINKVDLNSDGID ELVVFEQKEDLSNNVSQVGFVTLSYNGEKYVLGDHFLENGESIEYANFYDLDSDGYKEVILLVKSKDKTNMHIYKVVDNE ITKIYDLDASWLQNKEDFNDMKVKIGYIDGDDKLDILMLHLNNKTNEMFASVANFDGKMKIKDSVKFENVKNLSELYITL GNVASSVGNSSAAIKGIVLDIPILKDNNYITQILYMKDGKINKAFSDYDKTITKSYYIPVDDIDKDKIIEIPIVAGSTGN NKNTYSSKSSATISWYRWNGKEGADSSLIFTSQIYYNYKYNFKLFIPNNLFDKILVEQEFVGEKAVFKFYYFDYSDRKNL FNIVVESKNKLEDRKNTGTQNSIVLQESDEYTFLLVVNNANEMDKLDMTIDALKEYFSLIYG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52773; Mature: 52773
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVLKLITVVALMMLFVTGCNIKTESPEQLAKIPDYDDTKKVLYDGIDQLLKPDSSMILP CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEECC SNTKEVGKINKVDLNSDGIDELVVFEQKEDLSNNVSQVGFVTLSYNGEKYVLGDHFLENG CCCHHHCCEEEEECCCCCCCEEEEEECHHHHHCCCCEEEEEEEEECCCEEEECHHHHCCC ESIEYANFYDLDSDGYKEVILLVKSKDKTNMHIYKVVDNEITKIYDLDASWLQNKEDFND CCEEEEEEEECCCCCCEEEEEEEECCCCCCEEEEEEECCCCEEEEECCHHHHCCCCCCCC MKVKIGYIDGDDKLDILMLHLNNKTNEMFASVANFDGKMKIKDSVKFENVKNLSELYITL EEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHCHHHHHEEH GNVASSVGNSSAAIKGIVLDIPILKDNNYITQILYMKDGKINKAFSDYDKTITKSYYIPV HHHHHHCCCCCCEEEEEEEEEEEEECCCEEEEEEEEECCCCCCHHHHHHHHHHEEEEECC DDIDKDKIIEIPIVAGSTGNNKNTYSSKSSATISWYRWNGKEGADSSLIFTSQIYYNYKY CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEEEEE NFKLFIPNNLFDKILVEQEFVGEKAVFKFYYFDYSDRKNLFNIVVESKNKLEDRKNTGTQ EEEEEECCCHHHHHHHHHHHCCCEEEEEEEEEECCCCCCEEEEEECCCHHHHHHHCCCCC NSIVLQESDEYTFLLVVNNANEMDKLDMTIDALKEYFSLIYG CEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKVLKLITVVALMMLFVTGCNIKTESPEQLAKIPDYDDTKKVLYDGIDQLLKPDSSMILP CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEECC SNTKEVGKINKVDLNSDGIDELVVFEQKEDLSNNVSQVGFVTLSYNGEKYVLGDHFLENG CCCHHHCCEEEEECCCCCCCEEEEEECHHHHHCCCCEEEEEEEEECCCEEEECHHHHCCC ESIEYANFYDLDSDGYKEVILLVKSKDKTNMHIYKVVDNEITKIYDLDASWLQNKEDFND CCEEEEEEEECCCCCCEEEEEEEECCCCCCEEEEEEECCCCEEEEECCHHHHCCCCCCCC MKVKIGYIDGDDKLDILMLHLNNKTNEMFASVANFDGKMKIKDSVKFENVKNLSELYITL EEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHCHHHHHEEH GNVASSVGNSSAAIKGIVLDIPILKDNNYITQILYMKDGKINKAFSDYDKTITKSYYIPV HHHHHHCCCCCCEEEEEEEEEEEEECCCEEEEEEEEECCCCCCHHHHHHHHHHEEEEECC DDIDKDKIIEIPIVAGSTGNNKNTYSSKSSATISWYRWNGKEGADSSLIFTSQIYYNYKY CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEEEEE NFKLFIPNNLFDKILVEQEFVGEKAVFKFYYFDYSDRKNLFNIVVESKNKLEDRKNTGTQ EEEEEECCCHHHHHHHHHHHCCCEEEEEEEEEECCCCCCEEEEEECCCHHHHHHHCCCCC NSIVLQESDEYTFLLVVNNANEMDKLDMTIDALKEYFSLIYG CEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA