| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is thiE1
Identifier: 126699205
GI number: 126699205
Start: 1856405
End: 1857037
Strand: Direct
Name: thiE1
Synonym: CD1601
Alternate gene names: 126699205
Gene position: 1856405-1857037 (Clockwise)
Preceding gene: 126699204
Following gene: 126699206
Centisome position: 43.27
GC content: 29.54
Gene sequence:
>633_bases ATGATTGATAAAGAATCTTTAAAAAAATGTTTAAAGTTGTATTTAGTAACTGACTCTGAAATGCTTAAAGGTAGAGACTT TTATAAATGTCTTGAAGATGCAATATCTTCTGGAATAACAACTGTACAACTTAGAGAAAAAAATGCTTCTGGAAGAGAGT TTTTAAGAAAAGCTATGAAACTTAGAGAAATAACTAAAAGATATGGTGTTAAGTTTATAATAAATGATAGAGTGGATATA GCACTTATTTGTGATGCAGATGGAGTACATGTAGGACAGAGTGACATTGATGTTAGAGAGGTTAGAAAGCTTATAGGAAA CAATAAAATTCTAGGAGTATCAGCAAGAACTTTAGAAGAAGCTATTTGTGCAAAAAATGATGGCGCAGACTATTTAGGTG TAGGGTCTATATTCACAACATCTACTAAATTAGATGCAAAATCAGCTTCGTTTGAAACTGTTAAAGAAATTAAAGAAAAA GTAGACATGCCATTTGTACTAATTGGAGGTATAAATTTAGACAATATAGATAAACTTAAATGTTTAGAAAGTGACGGGTA TGCTATAATATCAGCTATATTAAAAGCTGAAGATATCTCTAAAGAAGTGGAAAAGTGGACATTAAAAATATAA
Upstream 100 bases:
>100_bases GAAAATCTTATGAATGCTATTTATCAAATGGATATAGATGCTTTAAGTAAAAATTCTAATATTGAATTTTTAAATTAATA AAGAGTAAGGGAGACTTAAA
Downstream 100 bases:
>100_bases AATTGGCTCTGGTAGTGAAAAAAATGGAAAAATTTGATATAATCTAAGAGTAAAATTTAAGCAATTATAAATGATAAACT TTTCTACATATACTTTTTAA
Product: thiamine-phosphate pyrophosphorylase
Products: NA
Alternate protein names: TMP pyrophosphorylase; TMP-PPase; Thiamine-phosphate synthase
Number of amino acids: Translated: 210; Mature: 210
Protein sequence:
>210_residues MIDKESLKKCLKLYLVTDSEMLKGRDFYKCLEDAISSGITTVQLREKNASGREFLRKAMKLREITKRYGVKFIINDRVDI ALICDADGVHVGQSDIDVREVRKLIGNNKILGVSARTLEEAICAKNDGADYLGVGSIFTTSTKLDAKSASFETVKEIKEK VDMPFVLIGGINLDNIDKLKCLESDGYAIISAILKAEDISKEVEKWTLKI
Sequences:
>Translated_210_residues MIDKESLKKCLKLYLVTDSEMLKGRDFYKCLEDAISSGITTVQLREKNASGREFLRKAMKLREITKRYGVKFIINDRVDI ALICDADGVHVGQSDIDVREVRKLIGNNKILGVSARTLEEAICAKNDGADYLGVGSIFTTSTKLDAKSASFETVKEIKEK VDMPFVLIGGINLDNIDKLKCLESDGYAIISAILKAEDISKEVEKWTLKI >Mature_210_residues MIDKESLKKCLKLYLVTDSEMLKGRDFYKCLEDAISSGITTVQLREKNASGREFLRKAMKLREITKRYGVKFIINDRVDI ALICDADGVHVGQSDIDVREVRKLIGNNKILGVSARTLEEAICAKNDGADYLGVGSIFTTSTKLDAKSASFETVKEIKEK VDMPFVLIGGINLDNIDKLKCLESDGYAIISAILKAEDISKEVEKWTLKI
Specific function: Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP)
COG id: COG0352
COG function: function code H; Thiamine monophosphate synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TMP-PPase family
Homologues:
Organism=Escherichia coli, GI1790426, Length=188, Percent_Identity=28.1914893617021, Blast_Score=72, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6325042, Length=206, Percent_Identity=40.2912621359223, Blast_Score=132, Evalue=3e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): THIE_CLOD6 (Q186F8)
Other databases:
- EMBL: AM180355 - RefSeq: YP_001088102.1 - ProteinModelPortal: Q186F8 - STRING: Q186F8 - GeneID: 4913386 - GenomeReviews: AM180355_GR - KEGG: cdf:CD1601 - NMPDR: fig|1496.1.peg.3316 - eggNOG: COG0352 - HOGENOM: HBG754477 - OMA: QRDGADY - ProtClustDB: CLSK2534956 - HAMAP: MF_00097 - InterPro: IPR013785 - InterPro: IPR022998 - InterPro: IPR003733 - Gene3D: G3DSA:3.20.20.70 - TIGRFAMs: TIGR00693
Pfam domain/function: PF02581 TMP-TENI; SSF51391 TMP_synthase
EC number: =2.5.1.3
Molecular weight: Translated: 23415; Mature: 23415
Theoretical pI: Translated: 7.82; Mature: 7.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDKESLKKCLKLYLVTDSEMLKGRDFYKCLEDAISSGITTVQLREKNASGREFLRKAMK CCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHH LREITKRYGVKFIINDRVDIALICDADGVHVGQSDIDVREVRKLIGNNKILGVSARTLEE HHHHHHHHCEEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEECHHHHHHH AICAKNDGADYLGVGSIFTTSTKLDAKSASFETVKEIKEKVDMPFVLIGGINLDNIDKLK HHHCCCCCCCEEECCCEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH CLESDGYAIISAILKAEDISKEVEKWTLKI EECCCCHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MIDKESLKKCLKLYLVTDSEMLKGRDFYKCLEDAISSGITTVQLREKNASGREFLRKAMK CCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHH LREITKRYGVKFIINDRVDIALICDADGVHVGQSDIDVREVRKLIGNNKILGVSARTLEE HHHHHHHHCEEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEECHHHHHHH AICAKNDGADYLGVGSIFTTSTKLDAKSASFETVKEIKEKVDMPFVLIGGINLDNIDKLK HHHCCCCCCCEEECCCEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH CLESDGYAIISAILKAEDISKEVEKWTLKI EECCCCHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA