| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is thiK
Identifier: 126699204
GI number: 126699204
Start: 1855594
End: 1856382
Strand: Direct
Name: thiK
Synonym: CD1600
Alternate gene names: 126699204
Gene position: 1855594-1856382 (Clockwise)
Preceding gene: 126699203
Following gene: 126699205
Centisome position: 43.25
GC content: 29.28
Gene sequence:
>789_bases ATGTATAATTTAATTAAAGATGTAAAAAAATTAAATCCATTGGTAATTCATTATACTAATAATGTAACTATAAATGATTG TGCTAATGTAACTTTAGCTGTAGGAGCAAGTCCTCTTATGAGTTTTTCATATGAGGAAGTAGAAGAAATGGTAAGTGTAG CAAACTCTGTAGTAATAAATATAGGAACTATGAACTCAAATATGTTGGATTTATTCCTATTAGCTGGAAAAGCAGCAAAT AAGTACAATAAACCTGTTGTTTTGGACCCAGTTGGAGTATTTGCAAGCAAAGCGAGAGCAGAACTTACAAGTAGACTTTT AAATGAAGTCAAATTTAGTGTTGTTAAAGGGAATGTATCAGAAATAAAGTTTATAGGTGGCTTTAATGTAAGGGGTAAAG GTGTAGATTCATTTGATGAAGAAGAAGATTCTACTGAGATAATAAGAAAGATTGCTGAAAAGCTTGAATGTGTAGTTGTA GCAACTGGAAAAATAGATATAATAACTAATGGTAAAGGTACATATAAAATAAACAATGGAACTGATAAATTAAAAGGAAT TACAGGAACTGGATGTATGACTGCTAGCTTGATTGCAAGTTTTATGGCTGTTACTGAGAATATATTAGAAGCAGCAACAA TGGGTGTTCTTACAATGTCTTTAAGTGGGGAATTAGCTAATTTAAATAATCCACCAATAGGTACATTTAAAGAAAATCTT ATGAATGCTATTTATCAAATGGATATAGATGCTTTAAGTAAAAATTCTAATATTGAATTTTTAAATTAA
Upstream 100 bases:
>100_bases TAACAGAAGCAATAAAAAGAAGTTTTGATATAGGTCATGGAGTAGGACCAGTACATCATTTTTATAAATTTGAGTAATAA AAAAATATTGGAGGTAGAAT
Downstream 100 bases:
>100_bases TAAAGAGTAAGGGAGACTTAAAATGATTGATAAAGAATCTTTAAAAAAATGTTTAAAGTTGTATTTAGTAACTGACTCTG AAATGCTTAAAGGTAGAGAC
Product: hydroxyethylthiazole kinase
Products: NA
Alternate protein names: 4-methyl-5-beta-hydroxyethylthiazole kinase; TH kinase; Thz kinase
Number of amino acids: Translated: 262; Mature: 262
Protein sequence:
>262_residues MYNLIKDVKKLNPLVIHYTNNVTINDCANVTLAVGASPLMSFSYEEVEEMVSVANSVVINIGTMNSNMLDLFLLAGKAAN KYNKPVVLDPVGVFASKARAELTSRLLNEVKFSVVKGNVSEIKFIGGFNVRGKGVDSFDEEEDSTEIIRKIAEKLECVVV ATGKIDIITNGKGTYKINNGTDKLKGITGTGCMTASLIASFMAVTENILEAATMGVLTMSLSGELANLNNPPIGTFKENL MNAIYQMDIDALSKNSNIEFLN
Sequences:
>Translated_262_residues MYNLIKDVKKLNPLVIHYTNNVTINDCANVTLAVGASPLMSFSYEEVEEMVSVANSVVINIGTMNSNMLDLFLLAGKAAN KYNKPVVLDPVGVFASKARAELTSRLLNEVKFSVVKGNVSEIKFIGGFNVRGKGVDSFDEEEDSTEIIRKIAEKLECVVV ATGKIDIITNGKGTYKINNGTDKLKGITGTGCMTASLIASFMAVTENILEAATMGVLTMSLSGELANLNNPPIGTFKENL MNAIYQMDIDALSKNSNIEFLN >Mature_262_residues MYNLIKDVKKLNPLVIHYTNNVTINDCANVTLAVGASPLMSFSYEEVEEMVSVANSVVINIGTMNSNMLDLFLLAGKAAN KYNKPVVLDPVGVFASKARAELTSRLLNEVKFSVVKGNVSEIKFIGGFNVRGKGVDSFDEEEDSTEIIRKIAEKLECVVV ATGKIDIITNGKGTYKINNGTDKLKGITGTGCMTASLIASFMAVTENILEAATMGVLTMSLSGELANLNNPPIGTFKENL MNAIYQMDIDALSKNSNIEFLN
Specific function: Thiamine biosynthesis. [C]
COG id: COG2145
COG function: function code H; Hydroxyethylthiazole kinase, sugar kinase family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Thz kinase family
Homologues:
Organism=Escherichia coli, GI1788421, Length=239, Percent_Identity=30.1255230125523, Blast_Score=123, Evalue=1e-29, Organism=Saccharomyces cerevisiae, GI6325042, Length=275, Percent_Identity=33.0909090909091, Blast_Score=124, Evalue=1e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): THIM_CLOD6 (Q186F4)
Other databases:
- EMBL: AM180355 - RefSeq: YP_001088101.1 - ProteinModelPortal: Q186F4 - SMR: Q186F4 - STRING: Q186F4 - GeneID: 4913385 - GenomeReviews: AM180355_GR - KEGG: cdf:CD1600 - NMPDR: fig|1496.1.peg.3317 - eggNOG: COG2145 - HOGENOM: HBG351126 - OMA: TISESTY - ProtClustDB: CLSK2534955 - HAMAP: MF_00228 - InterPro: IPR000417 - PANTHER: PTHR20857:SF14 - PIRSF: PIRSF000513 - PRINTS: PR01099
Pfam domain/function: PF02110 HK
EC number: =2.7.1.50
Molecular weight: Translated: 28291; Mature: 28291
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: BINDING 40-40 BINDING 116-116 BINDING 162-162 BINDING 189-189
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYNLIKDVKKLNPLVIHYTNNVTINDCANVTLAVGASPLMSFSYEEVEEMVSVANSVVIN CCHHHHHHHHCCCEEEEEECCEEECCCCCEEEEECCCHHHHCCHHHHHHHHHHHCEEEEE IGTMNSNMLDLFLLAGKAANKYNKPVVLDPVGVFASKARAELTSRLLNEVKFSVVKGNVS EECCCCCHHHHHEECCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHEECCHH EIKFIGGFNVRGKGVDSFDEEEDSTEIIRKIAEKLECVVVATGKIDIITNGKGTYKINNG HEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCEEEEEECCEEEEEECCCEEEEECCC TDKLKGITGTGCMTASLIASFMAVTENILEAATMGVLTMSLSGELANLNNPPIGTFKENL CHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHHHHH MNAIYQMDIDALSKNSNIEFLN HHHHHHHHHHHHCCCCCCEECC >Mature Secondary Structure MYNLIKDVKKLNPLVIHYTNNVTINDCANVTLAVGASPLMSFSYEEVEEMVSVANSVVIN CCHHHHHHHHCCCEEEEEECCEEECCCCCEEEEECCCHHHHCCHHHHHHHHHHHCEEEEE IGTMNSNMLDLFLLAGKAANKYNKPVVLDPVGVFASKARAELTSRLLNEVKFSVVKGNVS EECCCCCHHHHHEECCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHEECCHH EIKFIGGFNVRGKGVDSFDEEEDSTEIIRKIAEKLECVVVATGKIDIITNGKGTYKINNG HEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCEEEEEECCEEEEEECCCEEEEECCC TDKLKGITGTGCMTASLIASFMAVTENILEAATMGVLTMSLSGELANLNNPPIGTFKENL CHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHHHHH MNAIYQMDIDALSKNSNIEFLN HHHHHHHHHHHHCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA