| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is resE [H]
Identifier: 126699182
GI number: 126699182
Start: 1828996
End: 1830852
Strand: Direct
Name: resE [H]
Synonym: CD1579
Alternate gene names: 126699182
Gene position: 1828996-1830852 (Clockwise)
Preceding gene: 126699181
Following gene: 126699183
Centisome position: 42.63
GC content: 25.09
Gene sequence:
>1857_bases ATGGATACCCATAATAAATATGTAAATTTTATAAAAAATATACCTGTACCTTTTTTATATTGTAGAATTGTAAAGAGACA AGAAGATATAGAATATCGAGTAGAATATATAAGTAAGGGTATGGGCAAAGTATTACAATTAGAAGAAGGTATTTGTGATA AAAATATACTAGATGTATTGCCTGTATTTAAGTCTAAAAAATATTTCAAAGAGTTGTTCTCAAATGAAGTGGATTGTATA AAAAGGTACATTCCGACACTTAAAAACTGGATAAATATAAAAAAACAGATAATAGGGGATTCATACATAATTTTGTATTT TGGTAAAATTGTATTTGATTATAGACAGATAATCGATTCCTTTGATAAAAAGGAAAAAGTAGCTTATATTAAAGACGAAG AAGGCATATATATAGATTGCAGTGAAAATTTAATACCAATATTAAATAACAACATTAAAACAACGAAAGATATCTTTGGT AAAAATGATATAGAAGTATGGGGAGAGAATACAGGAAAATTATTTAGAGATGATTATAGAGAAGGAGTATCTAGTAAAAA AAGATTTTTACAAAATCTTTTTGAATATGAAGAAACATTTTTTATGGTTGAAAAATATTTTTTGTATGATGAAGACGAAC TTTTAGGTACTATAGGGATAGTAGACAATATAATATATAGTGGTTACAGTAATAGAAATTATAACTCAAAAGATTTAATG AAGATGATAGAACACTCAATTCCAGAGAATATGTTTTATAAAGATGTGTATGGAAATTATATTGGATTTAATTCAGGTTT TTTGAATTTAGCTTGTATGAATAAAGAAGAATTATTAGGGAAGAATAGTTATAAAATATCAGAAGAAGAAGCTTTAATAG ATAAGATTTTTGAAAGTGATAAGGGTGTAGTTGAAAATAAAAAAGTAGTTACATTTGAGTTAAATATAAGTATGAATGAT GAAAACAAGTGTATTGAGATTACAAAAAGGCCGTTTTTTGATAGCTATGGAAGTGTTATTGGAATAATTGGAACAGCAAG GGATATAAGTAGAAGAAAAAGATTAGAAGAGGAAATGGATAAAACTAGGATGGAATTTTTTGCAAATTTATCCCATGAAC TTAGAACGCCTATAAATTTAATATCATCTTCATTACAAGTGATAGAAAAAAAAGAAGCAGATTTAATAGAATCAAATGAT ACTTTAAAAAGAAATCTAGGTATAATAAAACAAAATGGAAATAGAATATTGAGGTTAGTAAATAATGTTATAGACTTTAC AAAAATGCAATCAGGATATTTAGATTTTAAACCAGAAGAATCTGATATAATTGCATTTATAGAGGAGATATGTATGTCTG TAGCTGATTTTGCAAGCCAAAATAATATACAACTTACATTTGATACAGAAATAGAAGAATTTTCAATGTTATTTGATTCA GAAAAATTGGAAAGAATAATATTAAATTTACTTTCTAATGGAATTAAGTACAATAAGAAAGATGGAAAAATAAATATATT TTTATATGTGAAAGATAATGTATTTAATATGAAAATATCTGATAGTGGTATAGGTATACCAAAAGAAAAAATAGATAAAA TATTTAATAGGTTTGAACAGATTGACAATGAACTTTCTTACAGAGTTAAAGGAAGTGGTATTGGACTTTCATTAGTGAAA TCTTTGGTTGAGTTGCATGAGGGAAGTATATCTTTAAAAAGTCAACTTGGTATTGGAAGTGAATTTATAGTTTCATTGCC TGTTAGAAGTAAAAATAATATTGAAAAATATAATCATAAAAGAGAAATCAGCAATGAACTAAGTAAAAAATTAGAAATAG AGTTCTCGGATTTATAA
Upstream 100 bases:
>100_bases CAAGTATATCTTATAAAATATGTTATAATTAATAGAAAATTGTCATATAATTAATTAAGTAGTATTATTATAAATAACAT TGAAAGGTAGTGGTTAGAAT
Downstream 100 bases:
>100_bases GTTTAAATATAAAAAATAAAATTTTAAAAAAGTATTGACAATTGATTTAGAAGGGTTTAAAATAAATTACAACATAATAA ATAAAAAGGCGATGAATAGG
Product: two-component histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 618; Mature: 618
Protein sequence:
>618_residues MDTHNKYVNFIKNIPVPFLYCRIVKRQEDIEYRVEYISKGMGKVLQLEEGICDKNILDVLPVFKSKKYFKELFSNEVDCI KRYIPTLKNWINIKKQIIGDSYIILYFGKIVFDYRQIIDSFDKKEKVAYIKDEEGIYIDCSENLIPILNNNIKTTKDIFG KNDIEVWGENTGKLFRDDYREGVSSKKRFLQNLFEYEETFFMVEKYFLYDEDELLGTIGIVDNIIYSGYSNRNYNSKDLM KMIEHSIPENMFYKDVYGNYIGFNSGFLNLACMNKEELLGKNSYKISEEEALIDKIFESDKGVVENKKVVTFELNISMND ENKCIEITKRPFFDSYGSVIGIIGTARDISRRKRLEEEMDKTRMEFFANLSHELRTPINLISSSLQVIEKKEADLIESND TLKRNLGIIKQNGNRILRLVNNVIDFTKMQSGYLDFKPEESDIIAFIEEICMSVADFASQNNIQLTFDTEIEEFSMLFDS EKLERIILNLLSNGIKYNKKDGKINIFLYVKDNVFNMKISDSGIGIPKEKIDKIFNRFEQIDNELSYRVKGSGIGLSLVK SLVELHEGSISLKSQLGIGSEFIVSLPVRSKNNIEKYNHKREISNELSKKLEIEFSDL
Sequences:
>Translated_618_residues MDTHNKYVNFIKNIPVPFLYCRIVKRQEDIEYRVEYISKGMGKVLQLEEGICDKNILDVLPVFKSKKYFKELFSNEVDCI KRYIPTLKNWINIKKQIIGDSYIILYFGKIVFDYRQIIDSFDKKEKVAYIKDEEGIYIDCSENLIPILNNNIKTTKDIFG KNDIEVWGENTGKLFRDDYREGVSSKKRFLQNLFEYEETFFMVEKYFLYDEDELLGTIGIVDNIIYSGYSNRNYNSKDLM KMIEHSIPENMFYKDVYGNYIGFNSGFLNLACMNKEELLGKNSYKISEEEALIDKIFESDKGVVENKKVVTFELNISMND ENKCIEITKRPFFDSYGSVIGIIGTARDISRRKRLEEEMDKTRMEFFANLSHELRTPINLISSSLQVIEKKEADLIESND TLKRNLGIIKQNGNRILRLVNNVIDFTKMQSGYLDFKPEESDIIAFIEEICMSVADFASQNNIQLTFDTEIEEFSMLFDS EKLERIILNLLSNGIKYNKKDGKINIFLYVKDNVFNMKISDSGIGIPKEKIDKIFNRFEQIDNELSYRVKGSGIGLSLVK SLVELHEGSISLKSQLGIGSEFIVSLPVRSKNNIEKYNHKREISNELSKKLEIEFSDL >Mature_618_residues MDTHNKYVNFIKNIPVPFLYCRIVKRQEDIEYRVEYISKGMGKVLQLEEGICDKNILDVLPVFKSKKYFKELFSNEVDCI KRYIPTLKNWINIKKQIIGDSYIILYFGKIVFDYRQIIDSFDKKEKVAYIKDEEGIYIDCSENLIPILNNNIKTTKDIFG KNDIEVWGENTGKLFRDDYREGVSSKKRFLQNLFEYEETFFMVEKYFLYDEDELLGTIGIVDNIIYSGYSNRNYNSKDLM KMIEHSIPENMFYKDVYGNYIGFNSGFLNLACMNKEELLGKNSYKISEEEALIDKIFESDKGVVENKKVVTFELNISMND ENKCIEITKRPFFDSYGSVIGIIGTARDISRRKRLEEEMDKTRMEFFANLSHELRTPINLISSSLQVIEKKEADLIESND TLKRNLGIIKQNGNRILRLVNNVIDFTKMQSGYLDFKPEESDIIAFIEEICMSVADFASQNNIQLTFDTEIEEFSMLFDS EKLERIILNLLSNGIKYNKKDGKINIFLYVKDNVFNMKISDSGIGIPKEKIDKIFNRFEQIDNELSYRVKGSGIGLSLVK SLVELHEGSISLKSQLGIGSEFIVSLPVRSKNNIEKYNHKREISNELSKKLEIEFSDL
Specific function: Member of the two-component regulatory system resD/resE involved in the global regulation of aerobic and anaerobic respiration. Probably phosphorylates resD [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI48994928, Length=352, Percent_Identity=26.4204545454545, Blast_Score=136, Evalue=3e-33, Organism=Escherichia coli, GI1788713, Length=403, Percent_Identity=25.8064516129032, Blast_Score=128, Evalue=1e-30, Organism=Escherichia coli, GI1789149, Length=237, Percent_Identity=31.6455696202532, Blast_Score=112, Evalue=6e-26, Organism=Escherichia coli, GI145693157, Length=270, Percent_Identity=26.2962962962963, Blast_Score=111, Evalue=1e-25, Organism=Escherichia coli, GI1786912, Length=253, Percent_Identity=27.2727272727273, Blast_Score=109, Evalue=7e-25, Organism=Escherichia coli, GI1786600, Length=276, Percent_Identity=24.6376811594203, Blast_Score=97, Evalue=3e-21, Organism=Escherichia coli, GI1788549, Length=364, Percent_Identity=21.1538461538462, Blast_Score=97, Evalue=4e-21, Organism=Escherichia coli, GI1788393, Length=245, Percent_Identity=24.4897959183673, Blast_Score=91, Evalue=3e-19, Organism=Escherichia coli, GI1790436, Length=257, Percent_Identity=25.2918287937743, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1786783, Length=227, Percent_Identity=25.9911894273128, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI87081816, Length=245, Percent_Identity=25.7142857142857, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1788279, Length=226, Percent_Identity=28.3185840707965, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI87082128, Length=236, Percent_Identity=23.3050847457627, Blast_Score=71, Evalue=3e-13, Organism=Escherichia coli, GI1790346, Length=233, Percent_Identity=21.4592274678112, Blast_Score=66, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 71998; Mature: 71998
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTHNKYVNFIKNIPVPFLYCRIVKRQEDIEYRVEYISKGMGKVLQLEEGICDKNILDVL CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH PVFKSKKYFKELFSNEVDCIKRYIPTLKNWINIKKQIIGDSYIILYFGKIVFDYRQIIDS HHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHH FDKKEKVAYIKDEEGIYIDCSENLIPILNNNIKTTKDIFGKNDIEVWGENTGKLFRDDYR HCCCCCEEEEECCCCEEEECCCCEEHHHCCCCCCHHHHCCCCCEEECCCCCCHHHHHHHH EGVSSKKRFLQNLFEYEETFFMVEKYFLYDEDELLGTIGIVDNIIYSGYSNRNYNSKDLM HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHH KMIEHSIPENMFYKDVYGNYIGFNSGFLNLACMNKEELLGKNSYKISEEEALIDKIFESD HHHHHHCCCHHHHHHHCCCCCCCCCCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHCC KGVVENKKVVTFELNISMNDENKCIEITKRPFFDSYGSVIGIIGTARDISRRKRLEEEMD CCCCCCCEEEEEEEEEEECCCCCEEEEECCCCHHCCCCCEEECCCHHHHHHHHHHHHHHH KTRMEFFANLSHELRTPINLISSSLQVIEKKEADLIESNDTLKRNLGIIKQNGNRILRLV HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEECCHHHHHHH NNVIDFTKMQSGYLDFKPEESDIIAFIEEICMSVADFASQNNIQLTFDTEIEEFSMLFDS HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCH EKLERIILNLLSNGIKYNKKDGKINIFLYVKDNVFNMKISDSGIGIPKEKIDKIFNRFEQ HHHHHHHHHHHHCCCEECCCCCEEEEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHH IDNELSYRVKGSGIGLSLVKSLVELHEGSISLKSQLGIGSEFIVSLPVRSKNNIEKYNHK HCCHHEEEECCCCCCHHHHHHHHHHHCCCEEEHHHCCCCCEEEEEECCCCCCCHHHHHHH REISNELSKKLEIEFSDL HHHHHHHHHHCCEEECCC >Mature Secondary Structure MDTHNKYVNFIKNIPVPFLYCRIVKRQEDIEYRVEYISKGMGKVLQLEEGICDKNILDVL CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH PVFKSKKYFKELFSNEVDCIKRYIPTLKNWINIKKQIIGDSYIILYFGKIVFDYRQIIDS HHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHH FDKKEKVAYIKDEEGIYIDCSENLIPILNNNIKTTKDIFGKNDIEVWGENTGKLFRDDYR HCCCCCEEEEECCCCEEEECCCCEEHHHCCCCCCHHHHCCCCCEEECCCCCCHHHHHHHH EGVSSKKRFLQNLFEYEETFFMVEKYFLYDEDELLGTIGIVDNIIYSGYSNRNYNSKDLM HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHH KMIEHSIPENMFYKDVYGNYIGFNSGFLNLACMNKEELLGKNSYKISEEEALIDKIFESD HHHHHHCCCHHHHHHHCCCCCCCCCCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHCC KGVVENKKVVTFELNISMNDENKCIEITKRPFFDSYGSVIGIIGTARDISRRKRLEEEMD CCCCCCCEEEEEEEEEEECCCCCEEEEECCCCHHCCCCCEEECCCHHHHHHHHHHHHHHH KTRMEFFANLSHELRTPINLISSSLQVIEKKEADLIESNDTLKRNLGIIKQNGNRILRLV HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEECCHHHHHHH NNVIDFTKMQSGYLDFKPEESDIIAFIEEICMSVADFASQNNIQLTFDTEIEEFSMLFDS HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCH EKLERIILNLLSNGIKYNKKDGKINIFLYVKDNVFNMKISDSGIGIPKEKIDKIFNRFEQ HHHHHHHHHHHHCCCEECCCCCEEEEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHH IDNELSYRVKGSGIGLSLVKSLVELHEGSISLKSQLGIGSEFIVSLPVRSKNNIEKYNHK HCCHHEEEECCCCCCHHHHHHHHHHHCCCEEEHHHCCCCCEEEEEECCCCCCCHHHHHHH REISNELSKKLEIEFSDL HHHHHHHHHHCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7934829; 9384377; 8631715 [H]