| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126699110
Identifier: 126699110
GI number: 126699110
Start: 1744509
End: 1745093
Strand: Direct
Name: 126699110
Synonym: CD1507
Alternate gene names: NA
Gene position: 1744509-1745093 (Clockwise)
Preceding gene: 126699108
Following gene: 126699111
Centisome position: 40.66
GC content: 30.77
Gene sequence:
>585_bases ATGAAAAGGTTTTTCATAGTAGTTTTAGGATGTATTTGTGTTTTAGGTATGATTTCTGGATGTAGCAAAAAAGAATCTAA GCCAGTAGAAAAAAACAAGAATAATAGTGAATGGTTTAGTAATTTAGATACGGAGGATGTTGATGGAAATAAGGTAACAA AAGAGATATTTTCAAATAAAGAACTTACTCTTATTAATGTCTGGACTACTTGGTGTGGACCATGTGTGGGTGAAATGCCA GAGCTTGAAGCATTATCAAAAGAATATGAGAGTAATAATTCCAATGTAGCTATAAAGGGATTAGTTGTAGAAGTTGATAA AACTGATATGAGAACTGGTCTTTCAAATGAAGAGAAAAATTTAGTTAAAGACATTATGAAAAAGTCAGATGCAACTTACC AACAATTGACTGTATCTGAAGAACTTAAAAAAACTGATTTTAAAAGAGTTATGGAGTTTCCAACAACTTATTTTGTAGAC AAGAAAGGAAACTTTGTGGGTGAGAAGGTTGTAGGTGCAAATAGTAAGGAAGATTGGAAAAAAATTATAGATGAAAGACT AAAAATGGTAAAAGCCAATGAGTAA
Upstream 100 bases:
>100_bases GCTCTTATTTATTAAATATAATTACTTTAATATAGAAGATAAGTTATTTTTATTTCAAGCAGCGATTTTATATACTATAT AAATTCTAGGAGTGTGAGAT
Downstream 100 bases:
>100_bases TTTTATTAAAGATAATAAAAAAGGCATTTCTATTATTGCAATTAGTATTATATTTATTGCATTAGGTACATATCGTGGAG AAACAAATACAGTATTAACT
Product: thioredoxin
Products: NA
Alternate protein names: Antioxidant AhpC/TSA Family; ThiolDisulfide Interchange Protein TlpA; Thioredoxin; ThiolDisulfide Interchange Protein YneN; AhpC/TSA Family Antioxidant; Alkyl Hydroperoxide Reductase; Cytochrome C-Type Biogenesis Protein CcdA; Redoxin Domain-Containing Protein
Number of amino acids: Translated: 194; Mature: 194
Protein sequence:
>194_residues MKRFFIVVLGCICVLGMISGCSKKESKPVEKNKNNSEWFSNLDTEDVDGNKVTKEIFSNKELTLINVWTTWCGPCVGEMP ELEALSKEYESNNSNVAIKGLVVEVDKTDMRTGLSNEEKNLVKDIMKKSDATYQQLTVSEELKKTDFKRVMEFPTTYFVD KKGNFVGEKVVGANSKEDWKKIIDERLKMVKANE
Sequences:
>Translated_194_residues MKRFFIVVLGCICVLGMISGCSKKESKPVEKNKNNSEWFSNLDTEDVDGNKVTKEIFSNKELTLINVWTTWCGPCVGEMP ELEALSKEYESNNSNVAIKGLVVEVDKTDMRTGLSNEEKNLVKDIMKKSDATYQQLTVSEELKKTDFKRVMEFPTTYFVD KKGNFVGEKVVGANSKEDWKKIIDERLKMVKANE >Mature_194_residues MKRFFIVVLGCICVLGMISGCSKKESKPVEKNKNNSEWFSNLDTEDVDGNKVTKEIFSNKELTLINVWTTWCGPCVGEMP ELEALSKEYESNNSNVAIKGLVVEVDKTDMRTGLSNEEKNLVKDIMKKSDATYQQLTVSEELKKTDFKRVMEFPTTYFVD KKGNFVGEKVVGANSKEDWKKIIDERLKMVKANE
Specific function: Unknown
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22084; Mature: 22084
Theoretical pI: Translated: 5.54; Mature: 5.54
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00194 THIOREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRFFIVVLGCICVLGMISGCSKKESKPVEKNKNNSEWFSNLDTEDVDGNKVTKEIFSNK CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCC ELTLINVWTTWCGPCVGEMPELEALSKEYESNNSNVAIKGLVVEVDKTDMRTGLSNEEKN CEEEEEEHHHHHCHHHCCCCHHHHHHHHHHCCCCCEEEEEEEEEECCHHHHCCCCCHHHH LVKDIMKKSDATYQQLTVSEELKKTDFKRVMEFPTTYFVDKKGNFVGEKVVGANSKEDWK HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHCCCCCHHHHH KIIDERLKMVKANE HHHHHHHHHHCCCC >Mature Secondary Structure MKRFFIVVLGCICVLGMISGCSKKESKPVEKNKNNSEWFSNLDTEDVDGNKVTKEIFSNK CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCC ELTLINVWTTWCGPCVGEMPELEALSKEYESNNSNVAIKGLVVEVDKTDMRTGLSNEEKN CEEEEEEHHHHHCHHHCCCCHHHHHHHHHHCCCCCEEEEEEEEEECCHHHHCCCCCHHHH LVKDIMKKSDATYQQLTVSEELKKTDFKRVMEFPTTYFVDKKGNFVGEKVVGANSKEDWK HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHCCCCCHHHHH KIIDERLKMVKANE HHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA