Click here to switch to the map view.

The map label for this gene is recA

Identifier: 126698927

GI number: 126698927

Start: 1539910

End: 1540956

Strand: Direct

Name: recA

Synonym: CD1328

Alternate gene names: 126698927

Gene position: 1539910-1540956 (Clockwise)

Preceding gene: 126698926

Following gene: 126698928

Centisome position: 35.89

GC content: 33.33

Gene sequence:

>1047_bases
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA

Upstream 100 bases:

>100_bases
TTAGTAGCGTTTTTAAATTGACTAGGTTTGATTTATGTTATATAATTAATATATAACAAGAGAACAAATGTTTGTAGATA
AATGAAGGGATGGTATAGAG

Downstream 100 bases:

>100_bases
GTAAAAATACAAAAAAATAACTAGTAATTAAAGACATGCCACGCTCCCTATTAGCTTGACACAATGTTGAAAAAATTATA
AAATTAAGTGAGGATAAAAT

Product: recombinase A

Products: NA

Alternate protein names: Recombinase A

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE

Sequences:

>Translated_348_residues
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
>Mature_347_residues
SVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSCV
ASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDMG
DSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIGS
RTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEID
EKVRAFYNLNEEHEESGTSVSKEIVEE

Specific function: Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with lexA causing its activation

COG id: COG0468

COG function: function code L; RecA/RadA recombinase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family

Homologues:

Organism=Escherichia coli, GI1789051, Length=325, Percent_Identity=64.3076923076923, Blast_Score=457, Evalue=1e-130,

Paralogues:

None

Copy number: 1548 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 800-1200 (L-broth) 40,000-60,000 (L-broth + Nalidixate) 4,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): RECA_CLOD6 (Q18BJ4)

Other databases:

- EMBL:   AM180355
- RefSeq:   YP_001087824.1
- ProteinModelPortal:   Q18BJ4
- SMR:   Q18BJ4
- STRING:   Q18BJ4
- GeneID:   4914615
- GenomeReviews:   AM180355_GR
- KEGG:   cdf:CD1328
- NMPDR:   fig|1496.1.peg.3404
- eggNOG:   COG0468
- HOGENOM:   HBG339889
- OMA:   GRDNTIT
- ProtClustDB:   PRK09354
- GO:   GO:0005737
- HAMAP:   MF_00268
- InterPro:   IPR003593
- InterPro:   IPR013765
- InterPro:   IPR020584
- InterPro:   IPR020588
- InterPro:   IPR020587
- PANTHER:   PTHR22942:SF1
- PRINTS:   PR00142
- SMART:   SM00382
- TIGRFAMs:   TIGR02012

Pfam domain/function: PF00154 RecA

EC number: NA

Molecular weight: Translated: 37378; Mature: 37247

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS00321 RECA_1; PS50162 RECA_2; PS50163 RECA_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRG
CCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEEECCCCEEEEEEECCCCCCC
RIVEVYGPESSGKTTVALSCVASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQP
CEEEEECCCCCCCEEEEEEEHHHCCCCCCEEEEEECHHHCCHHHHHHHCCCHHHEEECCC
DTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLT
CCCHHHHHHHHHHHHCCCEEEEEECHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHHH
GSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
CCCCCCCHHHHHHHHHHHHHCEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCHHHC
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLG
CCHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCHHHEECCCCEEEECCCCCC
QGRENVKKFLEDNLDLTTEIDEKVRAFYNLNEEHEESGTSVSKEIVEE
CCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHHCC
>Mature Secondary Structure 
SVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRG
CCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEEECCCCEEEEEEECCCCCCC
RIVEVYGPESSGKTTVALSCVASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQP
CEEEEECCCCCCCEEEEEEEHHHCCCCCCEEEEEECHHHCCHHHHHHHCCCHHHEEECCC
DTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLT
CCCHHHHHHHHHHHHCCCEEEEEECHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHHH
GSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
CCCCCCCHHHHHHHHHHHHHCEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCHHHC
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLG
CCHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCHHHEECCCCEEEECCCCCC
QGRENVKKFLEDNLDLTTEIDEKVRAFYNLNEEHEESGTSVSKEIVEE
CCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA