| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is pgsA [H]
Identifier: 126698926
GI number: 126698926
Start: 1539080
End: 1539622
Strand: Direct
Name: pgsA [H]
Synonym: CD1327
Alternate gene names: 126698926
Gene position: 1539080-1539622 (Clockwise)
Preceding gene: 126698925
Following gene: 126698927
Centisome position: 35.87
GC content: 29.1
Gene sequence:
>543_bases ATGAACTTGCCTAACAAGTTAACTTTGTTTAGAATATTTTTAATACCAGTATTTGTTTTAATTATGTTGCTCAATGTACC AAATAAATTTTTAATAGCTTGTATTATTTTTATAATAGCTTCAATTACTGATGCTTTAGATGGAAAAATAGCTAGAAAAT ACAATCTAGTCACTGACTTTGGAAAATTTATGGACCCATTAGCAGATAAGCTATTGGTTATTTCAGCACTTACATGTATG ATAGAAGACCATCTTGTAAGTAGTTGGATGGTAATTATAATAGTGGCTAGAGAGCTTACAGTTAGCATATTAAGAGCTAT AGCTGCTGCTGATGGAAAAGTAATTGCTGCTGGAAACAGTGGAAAACTTAAAACGATAACTCAAATGGTATCTATAGTGT TTTTATTGTTAGGTGCTCAGTTTGAAAATGTATTGATATTAAATATTGGTGAAATTCTCATTCTTATAGCTACACTACTT ACATTATATTCTGGATGGGAATATCTATATAAAAATAAAGAGCTTTTTATGTCTTCTAAGTAA
Upstream 100 bases:
>100_bases ATAGTGTATGTAAAAAGTGTAGACAATCTTGAAGTAGGAGAATTTGTAAGTGTTCAAATAAATGATGCAATGGAATACGA TTTAATGGGAGATGTTTTAT
Downstream 100 bases:
>100_bases AAAATTATGCTTTAATAAATAAAAACTAATGATTAATAAATAAAAAATAACAACTTAAAATTTTAAAAATGTAAAAAAGG GTATACTATTATAGTATACC
Product: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
Products: NA
Alternate protein names: Phosphatidylglycerophosphate synthase; PGP synthase [H]
Number of amino acids: Translated: 180; Mature: 180
Protein sequence:
>180_residues MNLPNKLTLFRIFLIPVFVLIMLLNVPNKFLIACIIFIIASITDALDGKIARKYNLVTDFGKFMDPLADKLLVISALTCM IEDHLVSSWMVIIIVARELTVSILRAIAAADGKVIAAGNSGKLKTITQMVSIVFLLLGAQFENVLILNIGEILILIATLL TLYSGWEYLYKNKELFMSSK
Sequences:
>Translated_180_residues MNLPNKLTLFRIFLIPVFVLIMLLNVPNKFLIACIIFIIASITDALDGKIARKYNLVTDFGKFMDPLADKLLVISALTCM IEDHLVSSWMVIIIVARELTVSILRAIAAADGKVIAAGNSGKLKTITQMVSIVFLLLGAQFENVLILNIGEILILIATLL TLYSGWEYLYKNKELFMSSK >Mature_180_residues MNLPNKLTLFRIFLIPVFVLIMLLNVPNKFLIACIIFIIASITDALDGKIARKYNLVTDFGKFMDPLADKLLVISALTCM IEDHLVSSWMVIIIVARELTVSILRAIAAADGKVIAAGNSGKLKTITQMVSIVFLLLGAQFENVLILNIGEILILIATLL TLYSGWEYLYKNKELFMSSK
Specific function: This protein catalyzes the committed step to the synthesis of the acidic phospholipids [H]
COG id: COG0558
COG function: function code I; Phosphatidylglycerophosphate synthase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CDP-alcohol phosphatidyltransferase class-I family [H]
Homologues:
Organism=Escherichia coli, GI1788220, Length=177, Percent_Identity=39.5480225988701, Blast_Score=118, Evalue=2e-28, Organism=Saccharomyces cerevisiae, GI6320059, Length=106, Percent_Identity=40.5660377358491, Blast_Score=63, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000462 - InterPro: IPR004570 [H]
Pfam domain/function: PF01066 CDP-OH_P_transf [H]
EC number: =2.7.8.5 [H]
Molecular weight: Translated: 20008; Mature: 20008
Theoretical pI: Translated: 9.12; Mature: 9.12
Prosite motif: PS00379 CDP_ALCOHOL_P_TRANSF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLPNKLTLFRIFLIPVFVLIMLLNVPNKFLIACIIFIIASITDALDGKIARKYNLVTDF CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH GKFMDPLADKLLVISALTCMIEDHLVSSWMVIIIVARELTVSILRAIAAADGKVIAAGNS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC GKLKTITQMVSIVFLLLGAQFENVLILNIGEILILIATLLTLYSGWEYLYKNKELFMSSK CCHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCHHHHHCCHHHHCCCC >Mature Secondary Structure MNLPNKLTLFRIFLIPVFVLIMLLNVPNKFLIACIIFIIASITDALDGKIARKYNLVTDF CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH GKFMDPLADKLLVISALTCMIEDHLVSSWMVIIIVARELTVSILRAIAAADGKVIAAGNS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC GKLKTITQMVSIVFLLLGAQFENVLILNIGEILILIATLLTLYSGWEYLYKNKELFMSSK CCHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCHHHHHCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA