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The map label for this gene is deoB

Identifier: 126698819

GI number: 126698819

Start: 1420647

End: 1421819

Strand: Direct

Name: deoB

Synonym: CD1223

Alternate gene names: 126698819

Gene position: 1420647-1421819 (Clockwise)

Preceding gene: 126698818

Following gene: 126698820

Centisome position: 33.11

GC content: 31.88

Gene sequence:

>1173_bases
ATGAGCAGAGTAATTTGGATTGTAATTGATAGTGTTGGGATAGGAGCATTACCTGATGCTGAAAAATTTGGTGATAGTAA
GGATGTAAGTACCCTTGGAAATATATTTAAGGAATATCCAGATATTCAGATTCCTAATATGAGAAATTTAGGTATAGGAA
ACATAGATGGTATAGATTTTTTTGAAAGTATAAAAGAACCAATAGGTTGTTTTGGAAAGTGTAAGGAAATGTCTCAGGGA
AAAGATACTACTACAGGTCATTGGGAAATGACTGGTATAATAGTTGACAAACCATTTAAGACATTTGAACATGGATTCTC
TAAGGAGATAATAGAAGAGTTTGAGAAAAAAACTGGAAGAAAAGTAGTAGGAAATAAACCAGCTTCAGGAACTGTAATAA
TAGATGAGTATGGAGAGCATCAAATAAAAACTGGAGATGTAATAGTATATACATCAGCTGATAGTGTATTTCAGATTGCT
GCTAATGAAGAAGTAATTCCCCTAGAAGAACTCTATAATATGTGCAAAATCGCTAGGGAAATAATGATGGGGGATAATGC
AGTAGCTAGAGTAATTGCTAGACCATTCATAGGTAAGAAAAAAGGTGAGTTTGTGAGGACTTCAAATAGAAGAGATTATT
CACTAGACCCATTTGAACCAACAGTTCTTGATAATATAAAAGAATCAGGACTTGATGTTTTAGCAGTTGGAAAAATAGAA
GATATTTTTAATGGAAAAGGAATTACAGATGCTATCCACACTAAAAGCAATATGGATGGAGTGGATGAAACTTTAAATTA
TATGAAACAAGATAATAAAGGTCTAATATATTCAAATCTCGTTGATTTTGATTCTAAATATGGTCATAGAAGAGACCCAG
AAGGATATAAGAAAGCTCTTGAAGAGTTTGATAGTAGACTTCCTGAAATAATGGCTAATATGAGAGAAGATGATATTTTA
ATAATCAATGCAGACCATGGAAATGACCCAACATATAAAGGTACAGACCATACAAGAGAATATATACCTGTTATGATTTA
TGGCAATAAGATTAAAAAAGGTTTTAATTTAGGAGTAAAAGATACTTTTGCTGATATTGGAGCAACTGTTGCAGATATAC
TAAATGTAAAGTTGCCTAAACATGGGTCAAGCTTTAAAGGAGATTTATTTTAA

Upstream 100 bases:

>100_bases
AGGAGAAACATCCTAGAAATGATGTTGATGTAGAATTACAAAAAGCAGAAGCTAAATAGACTATATAGCAAATTTTATAA
TTTAGAAGGAGCATATTTAT

Downstream 100 bases:

>100_bases
ATTATAAAATGATAAAAACTTAGCTTAATAGGATGGAGAGATTGGAATGTTTGAAAAGATAGCACAAAGTAGTAAATTTA
TAAATTCTAAAAGTAATATA

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MSRVIWIVIDSVGIGALPDAEKFGDSKDVSTLGNIFKEYPDIQIPNMRNLGIGNIDGIDFFESIKEPIGCFGKCKEMSQG
KDTTTGHWEMTGIIVDKPFKTFEHGFSKEIIEEFEKKTGRKVVGNKPASGTVIIDEYGEHQIKTGDVIVYTSADSVFQIA
ANEEVIPLEELYNMCKIAREIMMGDNAVARVIARPFIGKKKGEFVRTSNRRDYSLDPFEPTVLDNIKESGLDVLAVGKIE
DIFNGKGITDAIHTKSNMDGVDETLNYMKQDNKGLIYSNLVDFDSKYGHRRDPEGYKKALEEFDSRLPEIMANMREDDIL
IINADHGNDPTYKGTDHTREYIPVMIYGNKIKKGFNLGVKDTFADIGATVADILNVKLPKHGSSFKGDLF

Sequences:

>Translated_390_residues
MSRVIWIVIDSVGIGALPDAEKFGDSKDVSTLGNIFKEYPDIQIPNMRNLGIGNIDGIDFFESIKEPIGCFGKCKEMSQG
KDTTTGHWEMTGIIVDKPFKTFEHGFSKEIIEEFEKKTGRKVVGNKPASGTVIIDEYGEHQIKTGDVIVYTSADSVFQIA
ANEEVIPLEELYNMCKIAREIMMGDNAVARVIARPFIGKKKGEFVRTSNRRDYSLDPFEPTVLDNIKESGLDVLAVGKIE
DIFNGKGITDAIHTKSNMDGVDETLNYMKQDNKGLIYSNLVDFDSKYGHRRDPEGYKKALEEFDSRLPEIMANMREDDIL
IINADHGNDPTYKGTDHTREYIPVMIYGNKIKKGFNLGVKDTFADIGATVADILNVKLPKHGSSFKGDLF
>Mature_389_residues
SRVIWIVIDSVGIGALPDAEKFGDSKDVSTLGNIFKEYPDIQIPNMRNLGIGNIDGIDFFESIKEPIGCFGKCKEMSQGK
DTTTGHWEMTGIIVDKPFKTFEHGFSKEIIEEFEKKTGRKVVGNKPASGTVIIDEYGEHQIKTGDVIVYTSADSVFQIAA
NEEVIPLEELYNMCKIAREIMMGDNAVARVIARPFIGKKKGEFVRTSNRRDYSLDPFEPTVLDNIKESGLDVLAVGKIED
IFNGKGITDAIHTKSNMDGVDETLNYMKQDNKGLIYSNLVDFDSKYGHRRDPEGYKKALEEFDSRLPEIMANMREDDILI
INADHGNDPTYKGTDHTREYIPVMIYGNKIKKGFNLGVKDTFADIGATVADILNVKLPKHGSSFKGDLF

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family

Homologues:

Organism=Escherichia coli, GI1790843, Length=410, Percent_Identity=44.6341463414634, Blast_Score=312, Evalue=2e-86,
Organism=Escherichia coli, GI1789781, Length=424, Percent_Identity=27.8301886792453, Blast_Score=131, Evalue=8e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOB_CLOD6 (Q18B86)

Other databases:

- EMBL:   AM180355
- RefSeq:   YP_001087716.1
- ProteinModelPortal:   Q18B86
- SMR:   Q18B86
- STRING:   Q18B86
- GeneID:   4914865
- GenomeReviews:   AM180355_GR
- KEGG:   cdf:CD1223
- NMPDR:   fig|1496.1.peg.172
- eggNOG:   COG1015
- HOGENOM:   HBG644230
- OMA:   CHASGTE
- ProtClustDB:   PRK05362
- GO:   GO:0005737
- HAMAP:   MF_00740
- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124
- Gene3D:   G3DSA:3.40.720.10
- PIRSF:   PIRSF001491
- TIGRFAMs:   TIGR01696

Pfam domain/function: PF01676 Metalloenzyme; SSF53649 Alkaline_phosphatase_core

EC number: =5.4.2.7

Molecular weight: Translated: 43576; Mature: 43445

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRVIWIVIDSVGIGALPDAEKFGDSKDVSTLGNIFKEYPDIQIPNMRNLGIGNIDGIDF
CCEEEEEEEECCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
FESIKEPIGCFGKCKEMSQGKDTTTGHWEMTGIIVDKPFKTFEHGFSKEIIEEFEKKTGR
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCHHHHHCCHHHHHHHHHHHHCCC
KVVGNKPASGTVIIDEYGEHQIKTGDVIVYTSADSVFQIAANEEVIPLEELYNMCKIARE
EECCCCCCCCEEEEECCCCCEEECCCEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHH
IMMGDNAVARVIARPFIGKKKGEFVRTSNRRDYSLDPFEPTVLDNIKESGLDVLAVGKIE
HHHCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCHH
DIFNGKGITDAIHTKSNMDGVDETLNYMKQDNKGLIYSNLVDFDSKYGHRRDPEGYKKAL
HHHCCCCCCHHHHCCCCCCCHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCHHHHHHH
EEFDSRLPEIMANMREDDILIINADHGNDPTYKGTDHTREYIPVMIYGNKIKKGFNLGVK
HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHH
DTFADIGATVADILNVKLPKHGSSFKGDLF
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SRVIWIVIDSVGIGALPDAEKFGDSKDVSTLGNIFKEYPDIQIPNMRNLGIGNIDGIDF
CEEEEEEEECCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
FESIKEPIGCFGKCKEMSQGKDTTTGHWEMTGIIVDKPFKTFEHGFSKEIIEEFEKKTGR
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCHHHHHCCHHHHHHHHHHHHCCC
KVVGNKPASGTVIIDEYGEHQIKTGDVIVYTSADSVFQIAANEEVIPLEELYNMCKIARE
EECCCCCCCCEEEEECCCCCEEECCCEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHH
IMMGDNAVARVIARPFIGKKKGEFVRTSNRRDYSLDPFEPTVLDNIKESGLDVLAVGKIE
HHHCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCHH
DIFNGKGITDAIHTKSNMDGVDETLNYMKQDNKGLIYSNLVDFDSKYGHRRDPEGYKKAL
HHHCCCCCCHHHHCCCCCCCHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCHHHHHHH
EEFDSRLPEIMANMREDDILIINADHGNDPTYKGTDHTREYIPVMIYGNKIKKGFNLGVK
HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHH
DTFADIGATVADILNVKLPKHGSSFKGDLF
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA