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The map label for this gene is xerD1 [H]

Identifier: 126698818

GI number: 126698818

Start: 1419691

End: 1420605

Strand: Direct

Name: xerD1 [H]

Synonym: CD1222

Alternate gene names: 126698818

Gene position: 1419691-1420605 (Clockwise)

Preceding gene: 126698817

Following gene: 126698819

Centisome position: 33.09

GC content: 25.25

Gene sequence:

>915_bases
ATGGATATTATAGAGGGATATATAGATTACATAAAAGATAAAAAAAAATTATCAGAGAATACAGTGGCATCATACTTTAT
GGATATAAAAAAATATATGGAATATATAAATCAAAAAAGCATTAAACTAGTAGATATAGTAGAAAATGATATTATAAGTT
ACTTAATAAAGTTGGAAAAAGATAATGTATCAATAGCTACAATAGCGAGGATGATATCCTCTATAAAATCTTTTCATGAT
TATTTATTTTTAAATCATATATGTACAAATAATCCTGCAAAGGATATAAAAAAACCTAAAATAAAAAAAGAAAATATAAA
TATACTTACAGAAGAAGAAATTGAAAGACTATTAAATTTTCCAAAGTTAACAACGCCTAAATTGATTAGGGACAAGGCTA
TTTTTGAAGTATTATATGGTACTGGTATAAAAGTATCTGAATTAGTAGAGATGAATATAGAGGATATTGACCTAGATATT
GATTATATATATTGTAATTCATGTTGTAAAAATCAAAGAGTGATACCACTTTGTGATATTACAAAACTTTACTTAGAAAA
GTATCTAAAAGAAGCAAGACCTAAAATGGCTGTAGAAGGTGAAAAATCATTATTCGTAAGTTCATTAGGTCAAAGGTTTA
CACGACAAGGTCTTTGGAAAGTCATAAAAAAATATTCTAATCTAGCCAATATAGATAAAAATATAAATCCTACAATGCTT
AGACATTCATTTGCTATTCATTTGTTAAATGAAGGTGCTAACATTGCTGTTGTAAGTAAAATTTTAGGAAATGTTAATTT
ATCTAGTTTGCAAGTATATTTAAATCATATAGATAAAAACGTGAGAAGAGAAATAAAGGAGAAACATCCTAGAAATGATG
TTGATGTAGAATTACAAAAAGCAGAAGCTAAATAG

Upstream 100 bases:

>100_bases
ATATTATAATTATAATAGCACTATCATTGGGGTTGCAATTAATATTAAATACTGCAAGTATTGGTATTATTAAGTTCCTA
GCTAAATAAAGGAGTTTATA

Downstream 100 bases:

>100_bases
ACTATATAGCAAATTTTATAATTTAGAAGGAGCATATTTATATGAGCAGAGTAATTTGGATTGTAATTGATAGTGTTGGG
ATAGGAGCATTACCTGATGC

Product: tyrosine recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MDIIEGYIDYIKDKKKLSENTVASYFMDIKKYMEYINQKSIKLVDIVENDIISYLIKLEKDNVSIATIARMISSIKSFHD
YLFLNHICTNNPAKDIKKPKIKKENINILTEEEIERLLNFPKLTTPKLIRDKAIFEVLYGTGIKVSELVEMNIEDIDLDI
DYIYCNSCCKNQRVIPLCDITKLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANIDKNINPTML
RHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKNVRREIKEKHPRNDVDVELQKAEAK

Sequences:

>Translated_304_residues
MDIIEGYIDYIKDKKKLSENTVASYFMDIKKYMEYINQKSIKLVDIVENDIISYLIKLEKDNVSIATIARMISSIKSFHD
YLFLNHICTNNPAKDIKKPKIKKENINILTEEEIERLLNFPKLTTPKLIRDKAIFEVLYGTGIKVSELVEMNIEDIDLDI
DYIYCNSCCKNQRVIPLCDITKLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANIDKNINPTML
RHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKNVRREIKEKHPRNDVDVELQKAEAK
>Mature_304_residues
MDIIEGYIDYIKDKKKLSENTVASYFMDIKKYMEYINQKSIKLVDIVENDIISYLIKLEKDNVSIATIARMISSIKSFHD
YLFLNHICTNNPAKDIKKPKIKKENINILTEEEIERLLNFPKLTTPKLIRDKAIFEVLYGTGIKVSELVEMNIEDIDLDI
DYIYCNSCCKNQRVIPLCDITKLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANIDKNINPTML
RHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKNVRREIKEKHPRNDVDVELQKAEAK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=291, Percent_Identity=33.3333333333333, Blast_Score=188, Evalue=4e-49,
Organism=Escherichia coli, GI1790244, Length=293, Percent_Identity=25.938566552901, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1790767, Length=168, Percent_Identity=29.1666666666667, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35263; Mature: 35263

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIIEGYIDYIKDKKKLSENTVASYFMDIKKYMEYINQKSIKLVDIVENDIISYLIKLEK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCC
DNVSIATIARMISSIKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEIERLLNF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCEECHHHHHHHHCC
PKLTTPKLIRDKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKNQRVIPLCDI
CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHCCEEEEEEEECHHCCCCCEECHHHH
TKLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANIDKNINPTML
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
RHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKNVRREIKEKHPRNDVDVELQK
HHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECC
AEAK
CCCC
>Mature Secondary Structure
MDIIEGYIDYIKDKKKLSENTVASYFMDIKKYMEYINQKSIKLVDIVENDIISYLIKLEK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCC
DNVSIATIARMISSIKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEIERLLNF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCEECHHHHHHHHCC
PKLTTPKLIRDKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKNQRVIPLCDI
CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHCCEEEEEEEECHHCCCCCEECHHHH
TKLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANIDKNINPTML
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
RHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKNVRREIKEKHPRNDVDVELQK
HHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECC
AEAK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]