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The map label for this gene is rnfC [H]

Identifier: 126698731

GI number: 126698731

Start: 1336456

End: 1337793

Strand: Direct

Name: rnfC [H]

Synonym: CD1137

Alternate gene names: 126698731

Gene position: 1336456-1337793 (Clockwise)

Preceding gene: 126698730

Following gene: 126698732

Centisome position: 31.15

GC content: 36.47

Gene sequence:

>1338_bases
ATGAAACTCTTAACTTTTAAGGGAGGGATACATCCTCCATATAGAAAAGAGTACTCTAACACAAAGGCACTTGAAAAAGC
TCAAGCTCCAAAGATAGTTTACATTCCTCTTCAGCAACATATAGGGGCACCAGCTAAACCTATTGTTGAAGTTGGTGATG
AAGTAAAGTTTGGGCAAAAAATAGGTGAACAACAAGGTTTTGTTTCATGTAACGTTCATTCTTCAGTATCAGGTAAAGTT
ATTGCTATTGAACAACATGAAGTACCAGGAGGTTCAGCTCAATGTGTAGTTATCGAAAATGACTTTAAGGAAGAATTACA
TGAGAGTGTTCAACCAAAAGGTCAGTTAGAGGATTTGAGCAAAGAAGATATAGTAGGTATCATAAAAGAGGCAGGAATAG
TAGGTATGGGTGGAGCTACATTCCCTAACCATGTAAAAGTATCTCCTCCACCAGATAGCAAGGCAGAAGTAGTTATATTA
AATGGTGCAGAATGTGAACCATACTTAACTGCAGACCACAGATTAATGGTTGAAAATCCAGAAGATGTTGTGTTTGGTTT
AAGAGCATTAATGAAGGTATTAGATGTCAAAAAAGGATTTATAGGAATTGAAACGAATAAACCAGATGCTATAGAAGCAA
TTCAAAATGTAGCTAAAGACTATAGCGAAATCGAAGTTGTTGGCCTTCAAGTGAAATATCCACAAGGAGCAGAGAAACAA
CTTATTTATGCGTGTACAGGCAAAGAAGTTCCATCTGGTGGATTACCAATAGCAGCAGGTGCAGTTGTTGACAACGTTGC
CACAGCAGCACAGATAGCTAAGTCTATTAAAACAGGTATGCCTTTGGTTGAAAGAATCACTACAATAACAGGTAGTTGCA
TCAAAGAGCCAAAGAACCTAATAACAAAAGTTGGAACATTAGTTTCAGAAATAATAGAACAATGTGGTGGATTTAAAGAA
GATAAGAAGATTGGTAAGGTTATAATGGGTGGACCTATGATGGGAATAGCTCAATATACTACTGAAATAGCTACTAACAA
AGGTTCTTCAGGAATTTTATGTTTGGATGAGGAAGAATCACGTACTCCAGATATTCAAAACTGTTTAAGATGTGGAAGAT
GTACAGATGTATGTCCATCATTCTTACAACCACTTTTCATAAGTGCATATTCTTTAAAAGATGACTATGACACAGCTGAA
TATCATAGAGCAATGGATTGTATAGAATGCGGGTCTTGCTCATTTATTTGTCCAGCAAGAAGACCATTACTTCAATCTAT
AAGATCAGCAAAGAGAGAAATAGGAGCAAAGAGAAGAAAGCAAGCTGCTCAGAAATAA

Upstream 100 bases:

>100_bases
ATACGGATATTTTTTTAACAATTGTTAAGATTTTTTAATATATATAGTATACTTATAGAAGGCAGAAAAAATGTTTTTTT
ATAGATAAGGGGGTAAAACA

Downstream 100 bases:

>100_bases
AGAAAGTTAAGGGGGAAAAACGATGGAAAATAAGTTGATAGTATCATCTTCTCCTCATGTGAGAAGTAATGAAGATACTT
CATATATAATGAAACAAGTT

Product: electron transport complex protein

Products: NA

Alternate protein names: Nitrogen fixation protein rnfC [H]

Number of amino acids: Translated: 445; Mature: 445

Protein sequence:

>445_residues
MKLLTFKGGIHPPYRKEYSNTKALEKAQAPKIVYIPLQQHIGAPAKPIVEVGDEVKFGQKIGEQQGFVSCNVHSSVSGKV
IAIEQHEVPGGSAQCVVIENDFKEELHESVQPKGQLEDLSKEDIVGIIKEAGIVGMGGATFPNHVKVSPPPDSKAEVVIL
NGAECEPYLTADHRLMVENPEDVVFGLRALMKVLDVKKGFIGIETNKPDAIEAIQNVAKDYSEIEVVGLQVKYPQGAEKQ
LIYACTGKEVPSGGLPIAAGAVVDNVATAAQIAKSIKTGMPLVERITTITGSCIKEPKNLITKVGTLVSEIIEQCGGFKE
DKKIGKVIMGGPMMGIAQYTTEIATNKGSSGILCLDEEESRTPDIQNCLRCGRCTDVCPSFLQPLFISAYSLKDDYDTAE
YHRAMDCIECGSCSFICPARRPLLQSIRSAKREIGAKRRKQAAQK

Sequences:

>Translated_445_residues
MKLLTFKGGIHPPYRKEYSNTKALEKAQAPKIVYIPLQQHIGAPAKPIVEVGDEVKFGQKIGEQQGFVSCNVHSSVSGKV
IAIEQHEVPGGSAQCVVIENDFKEELHESVQPKGQLEDLSKEDIVGIIKEAGIVGMGGATFPNHVKVSPPPDSKAEVVIL
NGAECEPYLTADHRLMVENPEDVVFGLRALMKVLDVKKGFIGIETNKPDAIEAIQNVAKDYSEIEVVGLQVKYPQGAEKQ
LIYACTGKEVPSGGLPIAAGAVVDNVATAAQIAKSIKTGMPLVERITTITGSCIKEPKNLITKVGTLVSEIIEQCGGFKE
DKKIGKVIMGGPMMGIAQYTTEIATNKGSSGILCLDEEESRTPDIQNCLRCGRCTDVCPSFLQPLFISAYSLKDDYDTAE
YHRAMDCIECGSCSFICPARRPLLQSIRSAKREIGAKRRKQAAQK
>Mature_445_residues
MKLLTFKGGIHPPYRKEYSNTKALEKAQAPKIVYIPLQQHIGAPAKPIVEVGDEVKFGQKIGEQQGFVSCNVHSSVSGKV
IAIEQHEVPGGSAQCVVIENDFKEELHESVQPKGQLEDLSKEDIVGIIKEAGIVGMGGATFPNHVKVSPPPDSKAEVVIL
NGAECEPYLTADHRLMVENPEDVVFGLRALMKVLDVKKGFIGIETNKPDAIEAIQNVAKDYSEIEVVGLQVKYPQGAEKQ
LIYACTGKEVPSGGLPIAAGAVVDNVATAAQIAKSIKTGMPLVERITTITGSCIKEPKNLITKVGTLVSEIIEQCGGFKE
DKKIGKVIMGGPMMGIAQYTTEIATNKGSSGILCLDEEESRTPDIQNCLRCGRCTDVCPSFLQPLFISAYSLKDDYDTAE
YHRAMDCIECGSCSFICPARRPLLQSIRSAKREIGAKRRKQAAQK

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. Stabilizes rnfB [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=443, Percent_Identity=37.4717832957111, Blast_Score=283, Evalue=1e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 48138; Mature: 48138

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLTFKGGIHPPYRKEYSNTKALEKAQAPKIVYIPLQQHIGAPAKPIVEVGDEVKFGQK
CEEEEECCCCCCCHHHHCCCHHHHHHHCCCCEEEEEHHHHCCCCCCHHHHCCCCHHHHHH
IGEQQGFVSCNVHSSVSGKVIAIEQHEVPGGSAQCVVIENDFKEELHESVQPKGQLEDLS
HCCCCCEEEEEECCCCCCCEEEEEECCCCCCCEEEEEECCHHHHHHHHHCCCCCCHHCCC
KEDIVGIIKEAGIVGMGGATFPNHVKVSPPPDSKAEVVILNGAECEPYLTADHRLMVENP
HHHHHHHHHHCCEEECCCCCCCCCEEECCCCCCCCCEEEEECCCCCCEECCCCEEEEECH
EDVVFGLRALMKVLDVKKGFIGIETNKPDAIEAIQNVAKDYSEIEVVGLQVKYPQGAEKQ
HHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCE
LIYACTGKEVPSGGLPIAAGAVVDNVATAAQIAKSIKTGMPLVERITTITGSCIKEPKNL
EEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ITKVGTLVSEIIEQCGGFKEDKKIGKVIMGGPMMGIAQYTTEIATNKGSSGILCLDEEES
HHHHHHHHHHHHHHHCCCCCHHHHCCEEECCCCHHHHHHHHHHHCCCCCCCEEEECCCCC
RTPDIQNCLRCGRCTDVCPSFLQPLFISAYSLKDDYDTAEYHRAMDCIECGSCSFICPAR
CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEECCCH
RPLLQSIRSAKREIGAKRRKQAAQK
HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLLTFKGGIHPPYRKEYSNTKALEKAQAPKIVYIPLQQHIGAPAKPIVEVGDEVKFGQK
CEEEEECCCCCCCHHHHCCCHHHHHHHCCCCEEEEEHHHHCCCCCCHHHHCCCCHHHHHH
IGEQQGFVSCNVHSSVSGKVIAIEQHEVPGGSAQCVVIENDFKEELHESVQPKGQLEDLS
HCCCCCEEEEEECCCCCCCEEEEEECCCCCCCEEEEEECCHHHHHHHHHCCCCCCHHCCC
KEDIVGIIKEAGIVGMGGATFPNHVKVSPPPDSKAEVVILNGAECEPYLTADHRLMVENP
HHHHHHHHHHCCEEECCCCCCCCCEEECCCCCCCCCEEEEECCCCCCEECCCCEEEEECH
EDVVFGLRALMKVLDVKKGFIGIETNKPDAIEAIQNVAKDYSEIEVVGLQVKYPQGAEKQ
HHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCE
LIYACTGKEVPSGGLPIAAGAVVDNVATAAQIAKSIKTGMPLVERITTITGSCIKEPKNL
EEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ITKVGTLVSEIIEQCGGFKEDKKIGKVIMGGPMMGIAQYTTEIATNKGSSGILCLDEEES
HHHHHHHHHHHHHHHCCCCCHHHHCCEEECCCCHHHHHHHHHHHCCCCCCCEEEECCCCC
RTPDIQNCLRCGRCTDVCPSFLQPLFISAYSLKDDYDTAEYHRAMDCIECGSCSFICPAR
CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEECCCH
RPLLQSIRSAKREIGAKRRKQAAQK
HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8264535; 9492268; 9154934 [H]