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The map label for this gene is rnfD [H]

Identifier: 126698732

GI number: 126698732

Start: 1337816

End: 1338793

Strand: Direct

Name: rnfD [H]

Synonym: CD1138

Alternate gene names: 126698732

Gene position: 1337816-1338793 (Clockwise)

Preceding gene: 126698731

Following gene: 126698733

Centisome position: 31.18

GC content: 33.84

Gene sequence:

>978_bases
ATGGAAAATAAGTTGATAGTATCATCTTCTCCTCATGTGAGAAGTAATGAAGATACTTCATATATAATGAAACAAGTTAT
TATAGCACTCCTTCCAGCAGCAGTAGCAGGAGTATACTTCTTTAGACTTAATGCTTTGAGTGCTATGTTTTTTTGTATAC
TTGGTACAGTAGGTACTGAATTTTTATATCAAAAATTTACGAAGCAAAAAAGTACTATAGGAGATTTTTCAGCTGTTGTA
ACAGGATTATTATTAGCATTTAACGTACCAGCATCACTTCCTTGGTGGATGTGTCTAGTAGGAGGAATATTTGCAATATT
AGTAGTTAAAATGGTATTTGGTGGAATTGGATGTAACTTTGTCAATCCAGCACTTGCTGCAAGAGCATTTTTATTAGCAT
CATTCCCAGTAGCAATGACTGCTTGGACTCAACCAGGTGTTAACTGGATAGGTAAAAATTTAGATGCAGTTACTACAGCA
ACTCCATTAAGCTTTTTGAAAAATGGAGCAGCAGGACTGGCAGATCTTTCTAGCAATGGAATTAGTCTTGCTGACATGAT
GATAGGGAATATTGGTGGATGTATAGGTGAGACATCAGCAATATTATTATTATTAGGTGGAGTATACCTAATGTATAAAG
GCATAATAAATTATGTTATACCAGTATTTTACATAGCAACTGTATTTATATTAACATTCCTTTTAGGTGGATTTAATATA
ACTTTCGCAATATATCAACTGTTTGCTGGAGGACTTATGTTAGGTGGATTCTTCATGCTTACGGATTATACAACTTCGCC
TATGACTAAAAAAGGTCAAATAATATACGCTGTATTAGCTGGTCTTATAACAACTGTTATAAGAATGTATGGTGGATATC
CAGAAGGTGTATCTTACTCAATACTATTAGTGAACTGTCTTGCTCCACTTATAGATAAGTTTGTTAGAAATAGAGTATTT
GGGGAGGTGGCTAAATAA

Upstream 100 bases:

>100_bases
AGACCATTACTTCAATCTATAAGATCAGCAAAGAGAGAAATAGGAGCAAAGAGAAGAAAGCAAGCTGCTCAGAAATAAAG
AAAGTTAAGGGGGAAAAACG

Downstream 100 bases:

>100_bases
TGAACAGTATGGTGAGATTAGGTGGTACTTTACTTGCTATAAGTGCAATAGCTGCATTAGCTCTTGGAGCTACTAATCAG
GTTACAGCTCCAGTAATAGA

Product: electron transport complex protein

Products: NA

Alternate protein names: Nitrogen fixation protein rnfD [H]

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MENKLIVSSSPHVRSNEDTSYIMKQVIIALLPAAVAGVYFFRLNALSAMFFCILGTVGTEFLYQKFTKQKSTIGDFSAVV
TGLLLAFNVPASLPWWMCLVGGIFAILVVKMVFGGIGCNFVNPALAARAFLLASFPVAMTAWTQPGVNWIGKNLDAVTTA
TPLSFLKNGAAGLADLSSNGISLADMMIGNIGGCIGETSAILLLLGGVYLMYKGIINYVIPVFYIATVFILTFLLGGFNI
TFAIYQLFAGGLMLGGFFMLTDYTTSPMTKKGQIIYAVLAGLITTVIRMYGGYPEGVSYSILLVNCLAPLIDKFVRNRVF
GEVAK

Sequences:

>Translated_325_residues
MENKLIVSSSPHVRSNEDTSYIMKQVIIALLPAAVAGVYFFRLNALSAMFFCILGTVGTEFLYQKFTKQKSTIGDFSAVV
TGLLLAFNVPASLPWWMCLVGGIFAILVVKMVFGGIGCNFVNPALAARAFLLASFPVAMTAWTQPGVNWIGKNLDAVTTA
TPLSFLKNGAAGLADLSSNGISLADMMIGNIGGCIGETSAILLLLGGVYLMYKGIINYVIPVFYIATVFILTFLLGGFNI
TFAIYQLFAGGLMLGGFFMLTDYTTSPMTKKGQIIYAVLAGLITTVIRMYGGYPEGVSYSILLVNCLAPLIDKFVRNRVF
GEVAK
>Mature_325_residues
MENKLIVSSSPHVRSNEDTSYIMKQVIIALLPAAVAGVYFFRLNALSAMFFCILGTVGTEFLYQKFTKQKSTIGDFSAVV
TGLLLAFNVPASLPWWMCLVGGIFAILVVKMVFGGIGCNFVNPALAARAFLLASFPVAMTAWTQPGVNWIGKNLDAVTTA
TPLSFLKNGAAGLADLSSNGISLADMMIGNIGGCIGETSAILLLLGGVYLMYKGIINYVIPVFYIATVFILTFLLGGFNI
TFAIYQLFAGGLMLGGFFMLTDYTTSPMTKKGQIIYAVLAGLITTVIRMYGGYPEGVSYSILLVNCLAPLIDKFVRNRVF
GEVAK

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=347, Percent_Identity=33.1412103746398, Blast_Score=190, Evalue=1e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 34909; Mature: 34909

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENKLIVSSSPHVRSNEDTSYIMKQVIIALLPAAVAGVYFFRLNALSAMFFCILGTVGTE
CCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLYQKFTKQKSTIGDFSAVVTGLLLAFNVPASLPWWMCLVGGIFAILVVKMVFGGIGCNF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
VNPALAARAFLLASFPVAMTAWTQPGVNWIGKNLDAVTTATPLSFLKNGAAGLADLSSNG
CCHHHHHHHHHHHHCCHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHCCCC
ISLADMMIGNIGGCIGETSAILLLLGGVYLMYKGIINYVIPVFYIATVFILTFLLGGFNI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
TFAIYQLFAGGLMLGGFFMLTDYTTSPMTKKGQIIYAVLAGLITTVIRMYGGYPEGVSYS
HHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHH
ILLVNCLAPLIDKFVRNRVFGEVAK
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MENKLIVSSSPHVRSNEDTSYIMKQVIIALLPAAVAGVYFFRLNALSAMFFCILGTVGTE
CCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLYQKFTKQKSTIGDFSAVVTGLLLAFNVPASLPWWMCLVGGIFAILVVKMVFGGIGCNF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
VNPALAARAFLLASFPVAMTAWTQPGVNWIGKNLDAVTTATPLSFLKNGAAGLADLSSNG
CCHHHHHHHHHHHHCCHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHCCCC
ISLADMMIGNIGGCIGETSAILLLLGGVYLMYKGIINYVIPVFYIATVFILTFLLGGFNI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
TFAIYQLFAGGLMLGGFFMLTDYTTSPMTKKGQIIYAVLAGLITTVIRMYGGYPEGVSYS
HHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHH
ILLVNCLAPLIDKFVRNRVFGEVAK
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA