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The map label for this gene is ysaA [C]

Identifier: 126698470

GI number: 126698470

Start: 1074603

End: 1076132

Strand: Direct

Name: ysaA [C]

Synonym: CD0893

Alternate gene names: 126698470

Gene position: 1074603-1076132 (Clockwise)

Preceding gene: 126698468

Following gene: 126698471

Centisome position: 25.05

GC content: 32.75

Gene sequence:

>1530_bases
ATGGTATCGTATAAAATCATTTACGGGGGTGGTATTAAAATGTTTCAATTTGAAACACAAATACACAAATTAAGACATGA
TGTTTTAACTGCAATAGCTAGACTTGGAAAAGAAGATAACCTTACCAGAGAAGCAATGGATAATATTCAGTATGAAATAA
TAAAAGGTGAGAAACCTACATACAGATGCTGTGTTTATAAAGAAAGAGCTATAATATCTGAGAGAGTAAATGTAAGTATG
GGGTTACAACCAGGTCAAGATAAGATAGATTTAGATACAATGGATATAGAAGAAGATGAACAAATTATATATATTTTGGA
AGCTGCATGTGACAGTTGTCCAATAAATGAATTTACAGTAACAGATATTTGTAGAGGATGTCTAGCACATAGATGTAAAG
AAGCTTGTAAATTTGGAGCTATAACACATGTCGGAGGAATGGCCTATATAAATCATGAATTATGTAAGGCTTGTGGAATG
TGTAAAAAAGCTTGTCAATATGATGCCATCTCAGAGGTTGTTAGACCATGTAAGAGTGTTTGTCCAACTAATGCCTTAGG
ATTTGATAGAGAAAATATGAAAGCTATGATACATGAGGATAAATGTTTAAACTGTGGAGCATGTATGTCAGCATGTCCAT
TTGGAGCAATATCTGATAAGAGTTTGATAGCTCCTGTAGCTAGAAAGTTAGTTCAAAAAGAGAAAATGTATGCGGTGGTA
GCTCCAGCTATAACAGGTCAAGTTGAAGCAAATGTTACATATGGTCAAATAAAAAATGCTATAAAATCACTAGGATTTGT
TGATGTATTAGAAGCAGCTTGTGGAGCAGATGCAGTTACAGTTCATGAAAGCTTAGAATTTGCTGAAAGAATGGAAAAGG
GAGAAGCTTTTATGACAAATTCTTGTTGTCCAGGATTTGTTGGTTATATAGAAAAAACATACCCAAATCATGTAGGAAAA
ATATCTTCTACAGTGTCTCCTATGATAGCTAGTGGTAGATTTATAAAAAGTCATGAACCAGATGCTAAAGTTGTATTCAT
AGGACCATGTACAGCCAAAAAGAGTGAGGCAGCTAAGAAAGAATTAAAAGGAGCTGTTGATTATGTACTTACTTTTGAAG
AAATAATGGCATTATTTGAGGCATTTGATATAGACTTGGCTAAGTGTTCAAATGAAGATATAGATGATGCATCAATTTTT
GGAAGAGGTTTTGGAGCTGCTGGTGGTCTTACAAAAGCTATAGAAAATTATCTTGCTGAAAAAGGTATTGGTGTTAATTT
TGAACCTGTAAAGATTTCTGGTTCAAGAGAAATCAAGAAAACTATGACTATGGCTAATTTAGGAAAGCTAGAAGGTAATT
TTATAGAAGGAATGATGTGTGAAGGTGGTTGTATAAATGGTTCTGGTAAATTCTTATCAGGTGCAAAGGTTAAAGCCACT
TTTGATAGAAAAAATTCTCAATCAACTAAGAAAAGTGTCTTAGCAAATACAAAGATAAAAGATTTTAGTAATATAAATTT
AGAAAAATAA

Upstream 100 bases:

>100_bases
TATATAATAAAACAAAAAAACACTATATATATTCGATAAAATAAAATTTAAACATATAATATTTTATGTATATATTAATA
AAAGGACATATTGTGTTATA

Downstream 100 bases:

>100_bases
AGATAATACAAAGCAACAAAAATACATATTGTTAATAGAGTTGTTCTAAGTTGAGGTTTAACTTTTGGACAACTCTATTT
TTATTTATATATTTAATTAT

Product: iron-dependent hydrogenase

Products: NA

Alternate protein names: CpI; Fe-only hydrogenase; [Fe] hydrogenase [H]

Number of amino acids: Translated: 509; Mature: 509

Protein sequence:

>509_residues
MVSYKIIYGGGIKMFQFETQIHKLRHDVLTAIARLGKEDNLTREAMDNIQYEIIKGEKPTYRCCVYKERAIISERVNVSM
GLQPGQDKIDLDTMDIEEDEQIIYILEAACDSCPINEFTVTDICRGCLAHRCKEACKFGAITHVGGMAYINHELCKACGM
CKKACQYDAISEVVRPCKSVCPTNALGFDRENMKAMIHEDKCLNCGACMSACPFGAISDKSLIAPVARKLVQKEKMYAVV
APAITGQVEANVTYGQIKNAIKSLGFVDVLEAACGADAVTVHESLEFAERMEKGEAFMTNSCCPGFVGYIEKTYPNHVGK
ISSTVSPMIASGRFIKSHEPDAKVVFIGPCTAKKSEAAKKELKGAVDYVLTFEEIMALFEAFDIDLAKCSNEDIDDASIF
GRGFGAAGGLTKAIENYLAEKGIGVNFEPVKISGSREIKKTMTMANLGKLEGNFIEGMMCEGGCINGSGKFLSGAKVKAT
FDRKNSQSTKKSVLANTKIKDFSNINLEK

Sequences:

>Translated_509_residues
MVSYKIIYGGGIKMFQFETQIHKLRHDVLTAIARLGKEDNLTREAMDNIQYEIIKGEKPTYRCCVYKERAIISERVNVSM
GLQPGQDKIDLDTMDIEEDEQIIYILEAACDSCPINEFTVTDICRGCLAHRCKEACKFGAITHVGGMAYINHELCKACGM
CKKACQYDAISEVVRPCKSVCPTNALGFDRENMKAMIHEDKCLNCGACMSACPFGAISDKSLIAPVARKLVQKEKMYAVV
APAITGQVEANVTYGQIKNAIKSLGFVDVLEAACGADAVTVHESLEFAERMEKGEAFMTNSCCPGFVGYIEKTYPNHVGK
ISSTVSPMIASGRFIKSHEPDAKVVFIGPCTAKKSEAAKKELKGAVDYVLTFEEIMALFEAFDIDLAKCSNEDIDDASIF
GRGFGAAGGLTKAIENYLAEKGIGVNFEPVKISGSREIKKTMTMANLGKLEGNFIEGMMCEGGCINGSGKFLSGAKVKAT
FDRKNSQSTKKSVLANTKIKDFSNINLEK
>Mature_509_residues
MVSYKIIYGGGIKMFQFETQIHKLRHDVLTAIARLGKEDNLTREAMDNIQYEIIKGEKPTYRCCVYKERAIISERVNVSM
GLQPGQDKIDLDTMDIEEDEQIIYILEAACDSCPINEFTVTDICRGCLAHRCKEACKFGAITHVGGMAYINHELCKACGM
CKKACQYDAISEVVRPCKSVCPTNALGFDRENMKAMIHEDKCLNCGACMSACPFGAISDKSLIAPVARKLVQKEKMYAVV
APAITGQVEANVTYGQIKNAIKSLGFVDVLEAACGADAVTVHESLEFAERMEKGEAFMTNSCCPGFVGYIEKTYPNHVGK
ISSTVSPMIASGRFIKSHEPDAKVVFIGPCTAKKSEAAKKELKGAVDYVLTFEEIMALFEAFDIDLAKCSNEDIDDASIF
GRGFGAAGGLTKAIENYLAEKGIGVNFEPVKISGSREIKKTMTMANLGKLEGNFIEGMMCEGGCINGSGKFLSGAKVKAT
FDRKNSQSTKKSVLANTKIKDFSNINLEK

Specific function: Unknown

COG id: COG4624

COG function: function code R; Iron only hydrogenase large subunit, C-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR012675
- InterPro:   IPR009016
- InterPro:   IPR004108
- InterPro:   IPR003149
- InterPro:   IPR013352
- InterPro:   IPR001041 [H]

Pfam domain/function: PF02906 Fe_hyd_lg_C; PF02256 Fe_hyd_SSU [H]

EC number: =1.12.7.2 [H]

Molecular weight: Translated: 55585; Mature: 55585

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
8.6 %Cys+Met (Translated Protein)
4.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
8.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSYKIIYGGGIKMFQFETQIHKLRHDVLTAIARLGKEDNLTREAMDNIQYEIIKGEKPT
CEEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCEEEEEECCCCC
YRCCVYKERAIISERVNVSMGLQPGQDKIDLDTMDIEEDEQIIYILEAACDSCPINEFTV
EEEEEEHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEHHCCCCCCCCCCH
TDICRGCLAHRCKEACKFGAITHVGGMAYINHELCKACGMCKKACQYDAISEVVRPCKSV
HHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CPTNALGFDRENMKAMIHEDKCLNCGACMSACPFGAISDKSLIAPVARKLVQKEKMYAVV
CCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEEE
APAITGQVEANVTYGQIKNAIKSLGFVDVLEAACGADAVTVHESLEFAERMEKGEAFMTN
ECHHCCCEECCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEC
SCCPGFVGYIEKTYPNHVGKISSTVSPMIASGRFIKSHEPDAKVVFIGPCTAKKSEAAKK
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEECCCCCHHHHHHH
ELKGAVDYVLTFEEIMALFEAFDIDLAKCSNEDIDDASIFGRGFGAAGGLTKAIENYLAE
HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHH
KGIGVNFEPVKISGSREIKKTMTMANLGKLEGNFIEGMMCEGGCINGSGKFLSGAKVKAT
CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHCCEECCCCEECCCCCEECCCEEEEE
FDRKNSQSTKKSVLANTKIKDFSNINLEK
ECCCCCHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MVSYKIIYGGGIKMFQFETQIHKLRHDVLTAIARLGKEDNLTREAMDNIQYEIIKGEKPT
CEEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCEEEEEECCCCC
YRCCVYKERAIISERVNVSMGLQPGQDKIDLDTMDIEEDEQIIYILEAACDSCPINEFTV
EEEEEEHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEHHCCCCCCCCCCH
TDICRGCLAHRCKEACKFGAITHVGGMAYINHELCKACGMCKKACQYDAISEVVRPCKSV
HHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CPTNALGFDRENMKAMIHEDKCLNCGACMSACPFGAISDKSLIAPVARKLVQKEKMYAVV
CCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEEE
APAITGQVEANVTYGQIKNAIKSLGFVDVLEAACGADAVTVHESLEFAERMEKGEAFMTN
ECHHCCCEECCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEC
SCCPGFVGYIEKTYPNHVGKISSTVSPMIASGRFIKSHEPDAKVVFIGPCTAKKSEAAKK
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEECCCCCHHHHHHH
ELKGAVDYVLTFEEIMALFEAFDIDLAKCSNEDIDDASIFGRGFGAAGGLTKAIENYLAE
HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHH
KGIGVNFEPVKISGSREIKKTMTMANLGKLEGNFIEGMMCEGGCINGSGKFLSGAKVKAT
CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHCCEECCCCEECCCCCEECCCEEEEE
FDRKNSQSTKKSVLANTKIKDFSNINLEK
ECCCCCHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1911757; 9836629; 10529166 [H]