| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698291
Identifier: 126698291
GI number: 126698291
Start: 870253
End: 871176
Strand: Direct
Name: 126698291
Synonym: CD0712
Alternate gene names: NA
Gene position: 870253-871176 (Clockwise)
Preceding gene: 126698290
Following gene: 126698292
Centisome position: 20.28
GC content: 23.05
Gene sequence:
>924_bases ATGAATGACGAATTACTAAAAAAAGTCTACACATCTTCTTTTAGTAGTGCAAGTAGGGCTCTTAAAGATTTAACTATAAT AAATACAAAATCCTTAATAGATGATAAAACGCAAAGATGTGTGTATATAGACGAAAATAGACTAAGAGATGAACTTATTT ACTATAGATTTTATGGAGAAAAAATAGGAAATATCAATTTTTTAAATATTTTATTACCACTAATTTTATCAAATACTAAT ATTCAAAAAAGTGAAGATGAGGTTATTAAACTAATAAAAAAGTATGTTATTTATTTTAAAAAAGAAGAACTTTTATTTGA TTATTTATTAGGTTCTGTAGTGTATAATTCCATTATGCACAATCTTATAAATAATAGTAAAATAGAGTATGTCGAATTAC TACAGAGTATTAAAGACAAGATAATAGGATTTTCTATAGAATTAGACAAATCAGATGTTGTAAAGTTTCAGATGGCAAGG ATTAAAGCAATACAATTAATTGATAAGTACATTGATTTGAAATCTGAAGATTATGATGAAGAAAGTATTTTATTAAATGT TTTAAATGTTCTATATGATGTATATATGGAAGATAGAACTGTAGAAAATGAAGGAATTAATAGCATAAAAAAATCTATAT TATCCATTTTGGGTGAAGATAGTAAATTAAATGAAGATAATATAGATTTTATTTTTTCTATGTCCGAATATGTTGTTAAA TTGAGAAAATATAAAATTGGAGTTAAGGCATATAATAAAAGCATAGACCCAAGAAGTCTTATAAGACTTGAAGAAGGTAA TACTATAGTAGACCCTATATTTAATCAAATAACAGTTATGTCGAAAACCTTTAATGATAATATATTAAGCATAAAAATAA ATTCTAAATCAGGTATTTATATATTAAAGTTTAAAAAGGTTTAG
Upstream 100 bases:
>100_bases ACACTACTATCCCCCTATATATGACAGCTTCTTAAACGGGCTGTCTCTTTTTTTTTAATAACAATTTATTTACATTCAAT TTTTCAGAAAGGATATATTT
Downstream 100 bases:
>100_bases GTTATTAGAGTGTGCTATTTTTTTCTAGATAATCTAAAAAATCTTTTTCCTTAGTGTCAGTTAAAAAACATAATTCCTTT ACTATATTATTCCTAAGGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 307; Mature: 307
Protein sequence:
>307_residues MNDELLKKVYTSSFSSASRALKDLTIINTKSLIDDKTQRCVYIDENRLRDELIYYRFYGEKIGNINFLNILLPLILSNTN IQKSEDEVIKLIKKYVIYFKKEELLFDYLLGSVVYNSIMHNLINNSKIEYVELLQSIKDKIIGFSIELDKSDVVKFQMAR IKAIQLIDKYIDLKSEDYDEESILLNVLNVLYDVYMEDRTVENEGINSIKKSILSILGEDSKLNEDNIDFIFSMSEYVVK LRKYKIGVKAYNKSIDPRSLIRLEEGNTIVDPIFNQITVMSKTFNDNILSIKINSKSGIYILKFKKV
Sequences:
>Translated_307_residues MNDELLKKVYTSSFSSASRALKDLTIINTKSLIDDKTQRCVYIDENRLRDELIYYRFYGEKIGNINFLNILLPLILSNTN IQKSEDEVIKLIKKYVIYFKKEELLFDYLLGSVVYNSIMHNLINNSKIEYVELLQSIKDKIIGFSIELDKSDVVKFQMAR IKAIQLIDKYIDLKSEDYDEESILLNVLNVLYDVYMEDRTVENEGINSIKKSILSILGEDSKLNEDNIDFIFSMSEYVVK LRKYKIGVKAYNKSIDPRSLIRLEEGNTIVDPIFNQITVMSKTFNDNILSIKINSKSGIYILKFKKV >Mature_307_residues MNDELLKKVYTSSFSSASRALKDLTIINTKSLIDDKTQRCVYIDENRLRDELIYYRFYGEKIGNINFLNILLPLILSNTN IQKSEDEVIKLIKKYVIYFKKEELLFDYLLGSVVYNSIMHNLINNSKIEYVELLQSIKDKIIGFSIELDKSDVVKFQMAR IKAIQLIDKYIDLKSEDYDEESILLNVLNVLYDVYMEDRTVENEGINSIKKSILSILGEDSKLNEDNIDFIFSMSEYVVK LRKYKIGVKAYNKSIDPRSLIRLEEGNTIVDPIFNQITVMSKTFNDNILSIKINSKSGIYILKFKKV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35769; Mature: 35769
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDELLKKVYTSSFSSASRALKDLTIINTKSLIDDKTQRCVYIDENRLRDELIYYRFYGE CCHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHCCCCCEEEEECCHHHHHHHEEEEEECC KIGNINFLNILLPLILSNTNIQKSEDEVIKLIKKYVIYFKKEELLFDYLLGSVVYNSIMH CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NLINNSKIEYVELLQSIKDKIIGFSIELDKSDVVKFQMARIKAIQLIDKYIDLKSEDYDE HHHCCCCHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH ESILLNVLNVLYDVYMEDRTVENEGINSIKKSILSILGEDSKLNEDNIDFIFSMSEYVVK HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHH LRKYKIGVKAYNKSIDPRSLIRLEEGNTIVDPIFNQITVMSKTFNDNILSIKINSKSGIY HHHHHCCHHHHCCCCCHHHEEEECCCCEEHHHHHHHHHHHHEECCCCEEEEEECCCCCEE ILKFKKV EEEEECC >Mature Secondary Structure MNDELLKKVYTSSFSSASRALKDLTIINTKSLIDDKTQRCVYIDENRLRDELIYYRFYGE CCHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHCCCCCEEEEECCHHHHHHHEEEEEECC KIGNINFLNILLPLILSNTNIQKSEDEVIKLIKKYVIYFKKEELLFDYLLGSVVYNSIMH CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NLINNSKIEYVELLQSIKDKIIGFSIELDKSDVVKFQMARIKAIQLIDKYIDLKSEDYDE HHHCCCCHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH ESILLNVLNVLYDVYMEDRTVENEGINSIKKSILSILGEDSKLNEDNIDFIFSMSEYVVK HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHH LRKYKIGVKAYNKSIDPRSLIRLEEGNTIVDPIFNQITVMSKTFNDNILSIKINSKSGIY HHHHHCCHHHHCCCCCHHHEEEECCCCEEHHHHHHHHHHHHEECCCCEEEEEECCCCCEE ILKFKKV EEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA