Click here to switch to the map view.

The map label for this gene is yhcC [C]

Identifier: 126698292

GI number: 126698292

Start: 871523

End: 873277

Strand: Direct

Name: yhcC [C]

Synonym: CD0713

Alternate gene names: 126698292

Gene position: 871523-873277 (Clockwise)

Preceding gene: 126698291

Following gene: 126698293

Centisome position: 20.31

GC content: 27.41

Gene sequence:

>1755_bases
TTGAAAATTTTATTAACAACATTAAATTCCAAGTTTATTCATACAAATTTGGCTATAAGATATCTAAAAGAATTTGTAAG
AGATTTGATAGAAGTTAATATGAAAGAATACACGATAAATAACGATTTGGACTATATTTTAAAGGATATATATAAAAATG
AATATGATATAATATTATTCTCAACATATATCTGGAATGTGGGAGATATAGTTAAACTTTGTGATAATCTAAAAAAAATT
AGACCTAATACTAAAATAGCTTTGGGCGGACCGGAAGTGAGTTATGATAGTTATGAGGCAATGAAAAAGTATGATTTTGT
GGATTATATACTTTATGGAGAGGGAGAATTAATTTTTAGAGATTTAGTACTTCACTTGCAAGGAAAGATGGAAATAAATG
ATGTAAATGGACTTGTATATAGACAAGGCAATGAGATAATAGTGAATAAGCCTATGGAATTACTTCAAGATTTGGATGAG
ATTCCTAGTCCTTATGAAAACTTGAATCCAAAAGAATATGAAAATAGAATAGTGTATTATGAATCATCAAGAGGTTGCCC
TTTTAACTGCCAATACTGTTTATCATCTACTATTCCAGGTCTAAGGTATTTTAGTTTAGACAGGATAAAGAGTGATTTAA
AAGCTTTAATAGATGCAAGAGTATCACAAATAAAGTTTATAGATAGGACATTCAATGCAAATAGAAAAGTGGCTATGGAA
ATCATGGATTTTCTTATGAAAAATGATAATGGATATACAACTTATCATTTTGAAGTTACAGCGTATTTGATAGATGATAA
GATGCTTGAGTTTTTGGCTGATTGTAAAGAAGGTCTTTTTCAATTTGAAATAGGGGTTCAGTCAACGAATGAAAAAACAC
TTGATGCAGTAGGCAGAAGGGATGATTTTAAAAAGTTGTCTCATGTTGTACAAACTGTAGCATCTTATAGAAATATACAT
CAGCACTTAGACTTAATTGCAGGACTGCCTTATGAAGATTATAAGAGCTTTGAAAATTCTTTTAATGATGTATTTAATCT
AGGTATAGAGCATCTGCAATTAGGCTTTTTAAAGATGATTAAAGGGACAGGTATGAGAAAAGTTGCAGATGAGCATGGTT
TTAAATATAAGGATTATGCTCCATATGAGTTTTTATACAATAATTATATAAGCTATGAAGAAACTTTGAAGCTAAAGGAT
ATAGAAGATATACTGGAGAGATACTATAATTCTAAAAACTTTGTGTTATCTATGAGATATATTATAGGCAGATTTTATAA
AAAAAGCCCTTTTAAATTCTTTGAGGTTTTTGCCAAGTATTTTGATGAAAATGGCTACTTTGATTTGGCACAAGGAAAGA
ATCAGTTATATAAAATATTGATGGATTTCTATAATGAAAAAATCAACATAGATAATGATGTATTCAATGATATATTAAAA
TATGACTATATATCACTAGGTAAAACATCAAATATACCACAGTTTTTTAATAAGCTAGATGTGGATGATTTTAAGAATAA
ATGCCATGTATTTTTACAAGATAATGATAACTTATCAACATATTTACCTAGTTTTGTTGATAAACCAGCTAAACATATAA
TAAAATATGTTCATTTTGAGCCATTTAGATTTAATGTTGTGGATTTAAAAAATGATATAAATACAGAAATAAGAGAAGTA
GAAAATGTAGTCTTATTTGAGTATGATGATAAAAAAATATTTGAGAAATCTAAAACTCATAAAGTAGAGATTTAA

Upstream 100 bases:

>100_bases
TAAATTAATTATATAGATATTATTTAGACTTTACATATACTATTTTAACCTATAAGGGGTACAAAAAGACAGTATAATCT
TAAAAAGAGGTGAGAAATAT

Downstream 100 bases:

>100_bases
GTATTTAGGAGGATAAAATGGATTTTAAGATAGAAAAATATTTGCTAAAAAAAGCAGAAGAATTAGCTTTTATAACTATA
AAACATGGTGGAGAGTTTAA

Product: adenosylcobamide-dependent radical SAM superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 584; Mature: 584

Protein sequence:

>584_residues
MKILLTTLNSKFIHTNLAIRYLKEFVRDLIEVNMKEYTINNDLDYILKDIYKNEYDIILFSTYIWNVGDIVKLCDNLKKI
RPNTKIALGGPEVSYDSYEAMKKYDFVDYILYGEGELIFRDLVLHLQGKMEINDVNGLVYRQGNEIIVNKPMELLQDLDE
IPSPYENLNPKEYENRIVYYESSRGCPFNCQYCLSSTIPGLRYFSLDRIKSDLKALIDARVSQIKFIDRTFNANRKVAME
IMDFLMKNDNGYTTYHFEVTAYLIDDKMLEFLADCKEGLFQFEIGVQSTNEKTLDAVGRRDDFKKLSHVVQTVASYRNIH
QHLDLIAGLPYEDYKSFENSFNDVFNLGIEHLQLGFLKMIKGTGMRKVADEHGFKYKDYAPYEFLYNNYISYEETLKLKD
IEDILERYYNSKNFVLSMRYIIGRFYKKSPFKFFEVFAKYFDENGYFDLAQGKNQLYKILMDFYNEKINIDNDVFNDILK
YDYISLGKTSNIPQFFNKLDVDDFKNKCHVFLQDNDNLSTYLPSFVDKPAKHIIKYVHFEPFRFNVVDLKNDINTEIREV
ENVVLFEYDDKKIFEKSKTHKVEI

Sequences:

>Translated_584_residues
MKILLTTLNSKFIHTNLAIRYLKEFVRDLIEVNMKEYTINNDLDYILKDIYKNEYDIILFSTYIWNVGDIVKLCDNLKKI
RPNTKIALGGPEVSYDSYEAMKKYDFVDYILYGEGELIFRDLVLHLQGKMEINDVNGLVYRQGNEIIVNKPMELLQDLDE
IPSPYENLNPKEYENRIVYYESSRGCPFNCQYCLSSTIPGLRYFSLDRIKSDLKALIDARVSQIKFIDRTFNANRKVAME
IMDFLMKNDNGYTTYHFEVTAYLIDDKMLEFLADCKEGLFQFEIGVQSTNEKTLDAVGRRDDFKKLSHVVQTVASYRNIH
QHLDLIAGLPYEDYKSFENSFNDVFNLGIEHLQLGFLKMIKGTGMRKVADEHGFKYKDYAPYEFLYNNYISYEETLKLKD
IEDILERYYNSKNFVLSMRYIIGRFYKKSPFKFFEVFAKYFDENGYFDLAQGKNQLYKILMDFYNEKINIDNDVFNDILK
YDYISLGKTSNIPQFFNKLDVDDFKNKCHVFLQDNDNLSTYLPSFVDKPAKHIIKYVHFEPFRFNVVDLKNDINTEIREV
ENVVLFEYDDKKIFEKSKTHKVEI
>Mature_584_residues
MKILLTTLNSKFIHTNLAIRYLKEFVRDLIEVNMKEYTINNDLDYILKDIYKNEYDIILFSTYIWNVGDIVKLCDNLKKI
RPNTKIALGGPEVSYDSYEAMKKYDFVDYILYGEGELIFRDLVLHLQGKMEINDVNGLVYRQGNEIIVNKPMELLQDLDE
IPSPYENLNPKEYENRIVYYESSRGCPFNCQYCLSSTIPGLRYFSLDRIKSDLKALIDARVSQIKFIDRTFNANRKVAME
IMDFLMKNDNGYTTYHFEVTAYLIDDKMLEFLADCKEGLFQFEIGVQSTNEKTLDAVGRRDDFKKLSHVVQTVASYRNIH
QHLDLIAGLPYEDYKSFENSFNDVFNLGIEHLQLGFLKMIKGTGMRKVADEHGFKYKDYAPYEFLYNNYISYEETLKLKD
IEDILERYYNSKNFVLSMRYIIGRFYKKSPFKFFEVFAKYFDENGYFDLAQGKNQLYKILMDFYNEKINIDNDVFNDILK
YDYISLGKTSNIPQFFNKLDVDDFKNKCHVFLQDNDNLSTYLPSFVDKPAKHIIKYVHFEPFRFNVVDLKNDINTEIREV
ENVVLFEYDDKKIFEKSKTHKVEI

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 B12-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006158
- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR007197 [H]

Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 69218; Mature: 69218

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILLTTLNSKFIHTNLAIRYLKEFVRDLIEVNMKEYTINNDLDYILKDIYKNEYDIILF
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHEEECCCHHHHHHHHHCCCCCEEEE
STYIWNVGDIVKLCDNLKKIRPNTKIALGGPEVSYDSYEAMKKYDFVDYILYGEGELIFR
EEHHHCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHCCEEEEEECCCHHHHH
DLVLHLQGKMEINDVNGLVYRQGNEIIVNKPMELLQDLDEIPSPYENLNPKEYENRIVYY
HHHHHHCCCEEEECCCCEEEECCCEEEECCCHHHHHHHHHCCCCHHCCCCHHHCCEEEEE
ESSRGCPFNCQYCLSSTIPGLRYFSLDRIKSDLKALIDARVSQIKFIDRTFNANRKVAME
ECCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
IMDFLMKNDNGYTTYHFEVTAYLIDDKMLEFLADCKEGLFQFEIGVQSTNEKTLDAVGRR
HHHHHHCCCCCEEEEEEEEEEEEHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHCCC
DDFKKLSHVVQTVASYRNIHQHLDLIAGLPYEDYKSFENSFNDVFNLGIEHLQLGFLKMI
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGTGMRKVADEHGFKYKDYAPYEFLYNNYISYEETLKLKDIEDILERYYNSKNFVLSMRY
HCCCCHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHEEHHHHHHHHHHHHCCCCCEEEHHH
IIGRFYKKSPFKFFEVFAKYFDENGYFDLAQGKNQLYKILMDFYNEKINIDNDVFNDILK
HHHHHHCCCCHHHHHHHHHHHCCCCCEEHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
YDYISLGKTSNIPQFFNKLDVDDFKNKCHVFLQDNDNLSTYLPSFVDKPAKHIIKYVHFE
HHHHCCCCCCCCHHHHHHCCHHHCCCCEEEEEECCCCHHHHCCHHHCHHHHHHHHHHCCC
PFRFNVVDLKNDINTEIREVENVVLFEYDDKKIFEKSKTHKVEI
CEEEEEEECCCCCCHHHHHHCCEEEEEECCHHHHHCCCCCCCCC
>Mature Secondary Structure
MKILLTTLNSKFIHTNLAIRYLKEFVRDLIEVNMKEYTINNDLDYILKDIYKNEYDIILF
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHEEECCCHHHHHHHHHCCCCCEEEE
STYIWNVGDIVKLCDNLKKIRPNTKIALGGPEVSYDSYEAMKKYDFVDYILYGEGELIFR
EEHHHCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHCCEEEEEECCCHHHHH
DLVLHLQGKMEINDVNGLVYRQGNEIIVNKPMELLQDLDEIPSPYENLNPKEYENRIVYY
HHHHHHCCCEEEECCCCEEEECCCEEEECCCHHHHHHHHHCCCCHHCCCCHHHCCEEEEE
ESSRGCPFNCQYCLSSTIPGLRYFSLDRIKSDLKALIDARVSQIKFIDRTFNANRKVAME
ECCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
IMDFLMKNDNGYTTYHFEVTAYLIDDKMLEFLADCKEGLFQFEIGVQSTNEKTLDAVGRR
HHHHHHCCCCCEEEEEEEEEEEEHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHCCC
DDFKKLSHVVQTVASYRNIHQHLDLIAGLPYEDYKSFENSFNDVFNLGIEHLQLGFLKMI
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGTGMRKVADEHGFKYKDYAPYEFLYNNYISYEETLKLKDIEDILERYYNSKNFVLSMRY
HCCCCHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHEEHHHHHHHHHHHHCCCCCEEEHHH
IIGRFYKKSPFKFFEVFAKYFDENGYFDLAQGKNQLYKILMDFYNEKINIDNDVFNDILK
HHHHHHCCCCHHHHHHHHHHHCCCCCEEHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
YDYISLGKTSNIPQFFNKLDVDDFKNKCHVFLQDNDNLSTYLPSFVDKPAKHIIKYVHFE
HHHHCCCCCCCCHHHHHHCCHHHCCCCEEEEEECCCCHHHHCCHHHCHHHHHHHHHHCCC
PFRFNVVDLKNDINTEIREVENVVLFEYDDKKIFEKSKTHKVEI
CEEEEEEECCCCCCHHHHHHCCEEEEEECCHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]