| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is mmlH [H]
Identifier: 126698260
GI number: 126698260
Start: 824262
End: 825527
Strand: Direct
Name: mmlH [H]
Synonym: CD0681
Alternate gene names: 126698260
Gene position: 824262-825527 (Clockwise)
Preceding gene: 126698259
Following gene: 126698261
Centisome position: 19.21
GC content: 33.1
Gene sequence:
>1266_bases ATGAAAACAACGGTTGAAATAGAAAATGATATCATATTAGGAAAAGACTATTCAAACCTAAAAAGAGGAATTGCATTTTT TTCAATTGCTTTAATATACTTTTTTTATTGCTACAATTTTATGGTGGGTACTTTTATTAAACCAACAATGATTTATGCTT TAGCAGATGGGGGATTTGGTTTTTCATTAAAACAAACAGAAGAAATATTTGCAGTTATGTCTTTTGGTACAATTCCAGGT ACATTTATTTTTGGGGTGATTTCTACAAAAATTGGGAAGAAGAGGACTTTAATTAGCGTTGCTTTACTGATTGGATTGAC AACATTTATACCAATGTTATCTCCTACAAATATTATGTTATGGAAAATAGCACGTTTGTGTACAGGAGTAGTGTTGGGAG GCGTATTTGGAACAGCTATGCCTTTAGTTGCAGATATGTTTCCAAGTAAATATCGTGGTAAGTTAGCTGCTATATTAACT GCTTTATTTTCATTAGCAATGATTTTTGGTGGGAAAGTATATGGCGTTTTAGGTGATGCAAATTGGCAAATATTGATGTA TACTGCGATTATACCACCTATAGTTGGAGCTATCTTAGCAATCTTCTTTGTGCCAGATGATTTGGAGTATACAAAGGAAT TAGTTAAAAAGGGAAAAGAAACTGGTGAAAAGATTAGCTATATAAGTATGTATAAGGGAAAATACTTATGGATTGGATTG GGAACGATTCTTTTATCAGGTGCAAATTTTACAGCATATTCAGCATTTTCAAATAATGCAACTACATACCTAGTGACAGG AATAGGAATGTCAGCAGCAGTGGCTGGGTCTATATATAGTTTACAAGGAATTGGTCAATTAGTAGGATATTTATTCTGGG GTTCAATTGCAGATAAATTTGGAAGAAAAATACCTTTTATAGGTATGGCATTAGCAGCAGTATTTGTTTTTATATATACA AAATTAGGTGGAGATAATACAACAACATTCTATATGATATCAGTATTACTAGGTGTTGCTGTTGGATATTCTGGAGCATG GGGAGCATACTACACAGAGTTGTTCCCAAGTAAATATCGTTCGTTGTCATCTGGTATGTCATTTAATGGAGGAAGGATTA TATCTACGTTTGCAATACCTGCTATAGCTGGTACAGCTTCTGGTACTTTAGGTATGATGACTATCTTTTACATATCAATC GCAGTCTTTGTAGCAGGTGCTATTGTATGGTTATTCTTACCGGAGACGTTAAATAATAAAAAATAA
Upstream 100 bases:
>100_bases TATTGCTTTATAAAATTTAAGTGGGGAATGTATATGAAAAATAGATGTTTAAACTTTTAGCAAAATTATGACTAAATTTA AAAGGGGGAATTATAAAAAT
Downstream 100 bases:
>100_bases AATACTAGGAATTTATTTTGTTACTTAGAAAGGGGTGGCTTATGATTTCATCAATTGATGTATGTATTATAATAGGATAT TTGCTATTAATGTTAGTTAT
Product: transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 421; Mature: 421
Protein sequence:
>421_residues MKTTVEIENDIILGKDYSNLKRGIAFFSIALIYFFYCYNFMVGTFIKPTMIYALADGGFGFSLKQTEEIFAVMSFGTIPG TFIFGVISTKIGKKRTLISVALLIGLTTFIPMLSPTNIMLWKIARLCTGVVLGGVFGTAMPLVADMFPSKYRGKLAAILT ALFSLAMIFGGKVYGVLGDANWQILMYTAIIPPIVGAILAIFFVPDDLEYTKELVKKGKETGEKISYISMYKGKYLWIGL GTILLSGANFTAYSAFSNNATTYLVTGIGMSAAVAGSIYSLQGIGQLVGYLFWGSIADKFGRKIPFIGMALAAVFVFIYT KLGGDNTTTFYMISVLLGVAVGYSGAWGAYYTELFPSKYRSLSSGMSFNGGRIISTFAIPAIAGTASGTLGMMTIFYISI AVFVAGAIVWLFLPETLNNKK
Sequences:
>Translated_421_residues MKTTVEIENDIILGKDYSNLKRGIAFFSIALIYFFYCYNFMVGTFIKPTMIYALADGGFGFSLKQTEEIFAVMSFGTIPG TFIFGVISTKIGKKRTLISVALLIGLTTFIPMLSPTNIMLWKIARLCTGVVLGGVFGTAMPLVADMFPSKYRGKLAAILT ALFSLAMIFGGKVYGVLGDANWQILMYTAIIPPIVGAILAIFFVPDDLEYTKELVKKGKETGEKISYISMYKGKYLWIGL GTILLSGANFTAYSAFSNNATTYLVTGIGMSAAVAGSIYSLQGIGQLVGYLFWGSIADKFGRKIPFIGMALAAVFVFIYT KLGGDNTTTFYMISVLLGVAVGYSGAWGAYYTELFPSKYRSLSSGMSFNGGRIISTFAIPAIAGTASGTLGMMTIFYISI AVFVAGAIVWLFLPETLNNKK >Mature_421_residues MKTTVEIENDIILGKDYSNLKRGIAFFSIALIYFFYCYNFMVGTFIKPTMIYALADGGFGFSLKQTEEIFAVMSFGTIPG TFIFGVISTKIGKKRTLISVALLIGLTTFIPMLSPTNIMLWKIARLCTGVVLGGVFGTAMPLVADMFPSKYRGKLAAILT ALFSLAMIFGGKVYGVLGDANWQILMYTAIIPPIVGAILAIFFVPDDLEYTKELVKKGKETGEKISYISMYKGKYLWIGL GTILLSGANFTAYSAFSNNATTYLVTGIGMSAAVAGSIYSLQGIGQLVGYLFWGSIADKFGRKIPFIGMALAAVFVFIYT KLGGDNTTTFYMISVLLGVAVGYSGAWGAYYTELFPSKYRSLSSGMSFNGGRIISTFAIPAIAGTASGTLGMMTIFYISI AVFVAGAIVWLFLPETLNNKK
Specific function: Probable uptake of 4-methylmuconolactone [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Escherichia coli, GI87082404, Length=397, Percent_Identity=21.6624685138539, Blast_Score=67, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005829 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 45546; Mature: 45546
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTTVEIENDIILGKDYSNLKRGIAFFSIALIYFFYCYNFMVGTFIKPTMIYALADGGFG CCCEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC FSLKQTEEIFAVMSFGTIPGTFIFGVISTKIGKKRTLISVALLIGLTTFIPMLSPTNIML CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH WKIARLCTGVVLGGVFGTAMPLVADMFPSKYRGKLAAILTALFSLAMIFGGKVYGVLGDA HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECC NWQILMYTAIIPPIVGAILAIFFVPDDLEYTKELVKKGKETGEKISYISMYKGKYLWIGL CCEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEHEEEECCCEEEEEH GTILLSGANFTAYSAFSNNATTYLVTGIGMSAAVAGSIYSLQGIGQLVGYLFWGSIADKF HHHHCCCCCCEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GRKIPFIGMALAAVFVFIYTKLGGDNTTTFYMISVLLGVAVGYSGAWGAYYTELFPSKYR CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH SLSSGMSFNGGRIISTFAIPAIAGTASGTLGMMTIFYISIAVFVAGAIVWLFLPETLNNK HHHCCCCCCCCEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCC K C >Mature Secondary Structure MKTTVEIENDIILGKDYSNLKRGIAFFSIALIYFFYCYNFMVGTFIKPTMIYALADGGFG CCCEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC FSLKQTEEIFAVMSFGTIPGTFIFGVISTKIGKKRTLISVALLIGLTTFIPMLSPTNIML CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH WKIARLCTGVVLGGVFGTAMPLVADMFPSKYRGKLAAILTALFSLAMIFGGKVYGVLGDA HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECC NWQILMYTAIIPPIVGAILAIFFVPDDLEYTKELVKKGKETGEKISYISMYKGKYLWIGL CCEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEHEEEECCCEEEEEH GTILLSGANFTAYSAFSNNATTYLVTGIGMSAAVAGSIYSLQGIGQLVGYLFWGSIADKF HHHHCCCCCCEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GRKIPFIGMALAAVFVFIYTKLGGDNTTTFYMISVLLGVAVGYSGAWGAYYTELFPSKYR CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH SLSSGMSFNGGRIISTFAIPAIAGTASGTLGMMTIFYISIAVFVAGAIVWLFLPETLNNK HHHCCCCCCCCEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCC K C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9461415 [H]