| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698259
Identifier: 126698259
GI number: 126698259
Start: 822691
End: 824118
Strand: Direct
Name: 126698259
Synonym: CD0680
Alternate gene names: NA
Gene position: 822691-824118 (Clockwise)
Preceding gene: 126698258
Following gene: 126698260
Centisome position: 19.18
GC content: 29.69
Gene sequence:
>1428_bases GTGGCATCTACCAACAAAAATAATGTAACAAGTAAAGAGGAAGAAAAAGAAGTTTCTACAAGTGGGCTTGAATCATGTAC GGTTAAAGAAAACAAAGCTAAAATGAATCAAACTAATTTTAGTAATATAAATGAAAATCAAACAAATGAGAATAAAACGA ACACATATAAAAGAAATATAGATAAAGGAAATATAGATAAAGGGAATATAGATAAAACAAACACAAATAAATCCGACATA AATAAAGTTAACATAGATACAGTGGATACAGATAAATTAAATACAAATACTCTTACTGAAAAAAATAAAAAAGTTATATT TAAGGGGGAAGATAATATGTCATCTACAAAAATTTACTATGGAGATTCATTAGAAGTAACGCCTGTTGGAGTAATGGATT ACAATGATTTTTCAAAACAGACAAAAAGGGAACAGGAAATACCTGGATTTGATTCTAAGTATAGAGATTTTGTAGATTAT ATTATGAAGATTACACATAATATCTGGGAAGAAAAAGGTATAGGTGTTATTTATGATACATATCACAATAATGTTACAAT GCATTGTGGCTCTTCAAATTTAGTTGGTATTAAAGATGTTATTTCCAATACTCTTCAAACATTACATGCGTTTCCTGATA GAAGATTAATTGGTCAAAATGTAATATGGTCTAACTTTGGTGCTGATGGTTTTTTATCTTCTCACCGTGTTTTGTCTACA GCAACTAACTTAGGTGATAGTAATTTTGGACCAGCAACAGGTAGAAAAATAAACTTTAGAACTGTAATTGATTGTGCCAC AACTAACAATAGAATCCACGAAGAATGGTTGGTTAGAGATAATTTATGGATTGTTACTCAATTAGGATTAAACCCTCAGG AAGTAGCAAAGAGTATGGCAAAGGCAAGTGAATCTAAAGTGCTTAGTTTACAATCAACTTATGGTATCTGTGAATCTATG GATGGTCAATTTATGCCAACTAAGTATCAAGCAAAAGATGATTCTGTTGGCGAAATGATGCTTGAAATGACAAGCCGTAT TTATAATTATAAATATATAAATGAAGTTAAAAAATACTATCATGATAATGCAGTAGTACATTTTATATGTGATAAAGATT TAAATGGTTATGATGAGATTCAAGGAATGATTGTAAGTTTACTTGCATCAATTCCAAATGGAAGTTATGAAGTGGAAAGA GTAACTTGTAATCAAAGAGAAAAAAATGAAGGTTATGATGTATCTGTAAGATGGAGATTACGTGGAATAAATGAAGGTAT AGGATTTTTTGGACAGCCTTCTGGAAAGCATATAGAAGTAATGGGAATCAATCATTATCATATACTACAAGGTAAAGTAA AGGAGGAGTGGATAACTTTTGATGGTATGGATGTATTAAAACAAATGTATATGGGAGTAGAAGAATAA
Upstream 100 bases:
>100_bases TATTGGTTGAAACAACAAGGGCTTGATATTCTTGAGAGAACTAAAAGTATTTTTAATGCTTAGTTATGCATACGTATTCT GAAATAAAGGGGGATATAAA
Downstream 100 bases:
>100_bases AGCTGTTTAGAGTATAAATAGTTTTGAAATGTATATAGGGAAGTATTGCTTTATAAAATTTAAGTGGGGAATGTATATGA AAAATAGATGTTTAAACTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 475; Mature: 474
Protein sequence:
>475_residues MASTNKNNVTSKEEEKEVSTSGLESCTVKENKAKMNQTNFSNINENQTNENKTNTYKRNIDKGNIDKGNIDKTNTNKSDI NKVNIDTVDTDKLNTNTLTEKNKKVIFKGEDNMSSTKIYYGDSLEVTPVGVMDYNDFSKQTKREQEIPGFDSKYRDFVDY IMKITHNIWEEKGIGVIYDTYHNNVTMHCGSSNLVGIKDVISNTLQTLHAFPDRRLIGQNVIWSNFGADGFLSSHRVLST ATNLGDSNFGPATGRKINFRTVIDCATTNNRIHEEWLVRDNLWIVTQLGLNPQEVAKSMAKASESKVLSLQSTYGICESM DGQFMPTKYQAKDDSVGEMMLEMTSRIYNYKYINEVKKYYHDNAVVHFICDKDLNGYDEIQGMIVSLLASIPNGSYEVER VTCNQREKNEGYDVSVRWRLRGINEGIGFFGQPSGKHIEVMGINHYHILQGKVKEEWITFDGMDVLKQMYMGVEE
Sequences:
>Translated_475_residues MASTNKNNVTSKEEEKEVSTSGLESCTVKENKAKMNQTNFSNINENQTNENKTNTYKRNIDKGNIDKGNIDKTNTNKSDI NKVNIDTVDTDKLNTNTLTEKNKKVIFKGEDNMSSTKIYYGDSLEVTPVGVMDYNDFSKQTKREQEIPGFDSKYRDFVDY IMKITHNIWEEKGIGVIYDTYHNNVTMHCGSSNLVGIKDVISNTLQTLHAFPDRRLIGQNVIWSNFGADGFLSSHRVLST ATNLGDSNFGPATGRKINFRTVIDCATTNNRIHEEWLVRDNLWIVTQLGLNPQEVAKSMAKASESKVLSLQSTYGICESM DGQFMPTKYQAKDDSVGEMMLEMTSRIYNYKYINEVKKYYHDNAVVHFICDKDLNGYDEIQGMIVSLLASIPNGSYEVER VTCNQREKNEGYDVSVRWRLRGINEGIGFFGQPSGKHIEVMGINHYHILQGKVKEEWITFDGMDVLKQMYMGVEE >Mature_474_residues ASTNKNNVTSKEEEKEVSTSGLESCTVKENKAKMNQTNFSNINENQTNENKTNTYKRNIDKGNIDKGNIDKTNTNKSDIN KVNIDTVDTDKLNTNTLTEKNKKVIFKGEDNMSSTKIYYGDSLEVTPVGVMDYNDFSKQTKREQEIPGFDSKYRDFVDYI MKITHNIWEEKGIGVIYDTYHNNVTMHCGSSNLVGIKDVISNTLQTLHAFPDRRLIGQNVIWSNFGADGFLSSHRVLSTA TNLGDSNFGPATGRKINFRTVIDCATTNNRIHEEWLVRDNLWIVTQLGLNPQEVAKSMAKASESKVLSLQSTYGICESMD GQFMPTKYQAKDDSVGEMMLEMTSRIYNYKYINEVKKYYHDNAVVHFICDKDLNGYDEIQGMIVSLLASIPNGSYEVERV TCNQREKNEGYDVSVRWRLRGINEGIGFFGQPSGKHIEVMGINHYHILQGKVKEEWITFDGMDVLKQMYMGVEE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54061; Mature: 53930
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASTNKNNVTSKEEEKEVSTSGLESCTVKENKAKMNQTNFSNINENQTNENKTNTYKRNI CCCCCCCCCCCCHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCC DKGNIDKGNIDKTNTNKSDINKVNIDTVDTDKLNTNTLTEKNKKVIFKGEDNMSSTKIYY CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEE GDSLEVTPVGVMDYNDFSKQTKREQEIPGFDSKYRDFVDYIMKITHNIWEEKGIGVIYDT CCCEEEEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE YHNNVTMHCGSSNLVGIKDVISNTLQTLHAFPDRRLIGQNVIWSNFGADGFLSSHRVLST CCCCEEEEECCCCCEEHHHHHHHHHHHHHHCCCCHHHCCCCEEECCCCCCCCCCCHHHHH ATNLGDSNFGPATGRKINFRTVIDCATTNNRIHEEWLVRDNLWIVTQLGLNPQEVAKSMA HHCCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHEEECCEEEEEECCCCHHHHHHHHH KASESKVLSLQSTYGICESMDGQFMPTKYQAKDDSVGEMMLEMTSRIYNYKYINEVKKYY HCCHHHEEEEHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH HDNAVVHFICDKDLNGYDEIQGMIVSLLASIPNGSYEVERVTCNQREKNEGYDVSVRWRL CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEEEEE RGINEGIGFFGQPSGKHIEVMGINHYHILQGKVKEEWITFDGMDVLKQMYMGVEE EECCCCCCCCCCCCCCEEEEEECCEEEEECCCHHHHEEEECCHHHHHHHHCCCCC >Mature Secondary Structure ASTNKNNVTSKEEEKEVSTSGLESCTVKENKAKMNQTNFSNINENQTNENKTNTYKRNI CCCCCCCCCCCHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCC DKGNIDKGNIDKTNTNKSDINKVNIDTVDTDKLNTNTLTEKNKKVIFKGEDNMSSTKIYY CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEE GDSLEVTPVGVMDYNDFSKQTKREQEIPGFDSKYRDFVDYIMKITHNIWEEKGIGVIYDT CCCEEEEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE YHNNVTMHCGSSNLVGIKDVISNTLQTLHAFPDRRLIGQNVIWSNFGADGFLSSHRVLST CCCCEEEEECCCCCEEHHHHHHHHHHHHHHCCCCHHHCCCCEEECCCCCCCCCCCHHHHH ATNLGDSNFGPATGRKINFRTVIDCATTNNRIHEEWLVRDNLWIVTQLGLNPQEVAKSMA HHCCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHEEECCEEEEEECCCCHHHHHHHHH KASESKVLSLQSTYGICESMDGQFMPTKYQAKDDSVGEMMLEMTSRIYNYKYINEVKKYY HCCHHHEEEEHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH HDNAVVHFICDKDLNGYDEIQGMIVSLLASIPNGSYEVERVTCNQREKNEGYDVSVRWRL CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEEEEE RGINEGIGFFGQPSGKHIEVMGINHYHILQGKVKEEWITFDGMDVLKQMYMGVEE EECCCCCCCCCCCCCCEEEEEECCEEEEECCCHHHHEEEECCHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA