| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is ycbZ [H]
Identifier: 126698143
GI number: 126698143
Start: 671875
End: 674112
Strand: Direct
Name: ycbZ [H]
Synonym: CD0564
Alternate gene names: 126698143
Gene position: 671875-674112 (Clockwise)
Preceding gene: 126698142
Following gene: 126698144
Centisome position: 15.66
GC content: 29.22
Gene sequence:
>2238_bases TTGAAATATAATAATACATCTGAAATAAATCCACTAGATTATATATTGGGTCAAGAAAGAGCTGTAGAAGCTATGGAATT AGGGTTGAAAATAAATAATCCAGCGTACAACATATATATAGCTGGTGAACCTGGAACTGGTAAAAGTACTTATGCCTTAA AGGTTTTAAATGAGTATGCATCCAAAAAAAATACGCATAAAGATTGGTGTTATATATATAATTTTGAAAACCCTAGAGAG CCTATTATAGTTGAATTAGAAAAGGGGTTTGGAAGAGAACTTAAGAAAGATATGGAGAAATTAATTGAAAGTCTTTTAGA AGATTTTAAAAATGCGTTTGAAAGTGAAAATTTTGAAATAGAAAAAAATAAACTTCTGGATGAATATGAAATAGAAAAAG ATATGCTTTTGAAGCAAATTAAGAAATATGGAGAAGAAAAAGGATTTAAATTAAAACAGAGTAAAATGGGAATAGTTTTT ATCCCTTTGAAAGAAGAGGAAGATGAAAGTGATGAGTCTGATGAAGAGTTTTACAAAGCTAAAAGAGAACTAGAAAATAT GGCGATACAGGTCGTATATAAAATTAGAAACTTAGAAGAAATAGCTGAAAAAGCAGTGTTAGAGCTTGAAGAAGAGATAG CTAAACTTGTAGTAGAACCTCATATCAAGAGATTGTGTGAAAAATATGAAAATTATGATAAGATTCAAACTTATCTGGAA AATATAAAGAAAGATATAATAGAATATATGTATTTATTCTATTTAGATGAAGAGGAGTTAAAAGATAAGTATGATAAAGA GCATTTTATTAAATATAAAATTAACCTATTTGTAGACAATGGAAGCTCAAAGAATAAAGAATCAGCACCTGTTGTAGTAG AGATAAACCCAAGTCCAGCAAATCTATTTGGAAAGGCAGAGTATGATTATGCAAATGGAAATATAAAGACTGATTTCACA AAACTATTATCAGGAGCATTTCATAGGGCTAATGGTGGTTATTTAGTACTTTATGCAGACCAATTACTAAAATATACAAT GTCTTGGGAAATTCTTAAAAAGACTTTGCAGACTAAAAAAGTAATATTGGAAACACAAACAGCAATTAAACCAGAAAATA TGCCATTGGATGTTAAATTAGTACTGATTGGAAGCCACTATATATATGATATTTTATATAGATATGATGAAGATTTTGAA AAATATTTTAAAGTATTTGTAGACTTTGATAGTGAAATGGATAAAAATGAAGATAATGAAGAAGGAATAGCAAGATTTAT AGCATACCAATGTGATAAGAATAATTTAAGGCATTTTACTAAATCAGCAGTTGAAGAGGTTATTAAATTTAGCACTAGAT TATCTGGTGATTTAGAAAAATTATCAACTAAGTTTAATAAAATAATGGAAGTTGTAATAGAAGGAAGTGCTTATGCAGAG TTTAGAAATTCGGAGTATACAGAGCAGTGTGATGTTAAAAAAGCAATAAGTGAAAAGAGAAAAAGAATCAATAGAGTGGA AACACATATGGATGAATCAATTGAAAATGGATTTACTCTAATAGAAACAGAGGGAAGAAAAGTAGGAGTGATAAATGGTT TGTCAGTCTTAAGTACAGGAGAATACTCTTTTGGTAGAGCTTCAAGGATTACAGCGACCACTAGCCCAGGAAGTAAAGGC ATAGTAAATATAGAAAGAGAAGTAAATATGAGTGGCTCTATACATAACAAAGGAGTACTTATATTAGGTGGCTATCTTTC TGAGAATTTTGCACAGGATTTACTATTGTCACTAAATGCATATGTTTGTTTTGAACAAAATTATGGTGGAATAGATGGAG ATAGTGCATCTTCTGCAGAATTATATGTACTATTATCATCTCTTAGTGGAGTATCAATTAAACAAAATATTGCTGTTACA GGTTCTATAAATCAAAAGGGTGATATACAAGTAGTTGGTGGTATAAGTGAAAAGATAGAAGGATTTTATTCTATATGTAA AACTAAAGGGTTAAATGGTGAGCAAGGCGTCATAATTCCTAGAAAAAATCAAAGAAATCTCGTTTTATCAGATGAAGTTA ATGATGCAGTGCGAGATGGAAAATTTAAGATATATACTGTTGAAAGAGTAGAAGAGGCTATAGAGATATTGACAGATGTT AAATTTGAAGAAATAAAGAAATTGGTAAAAGAAAAATTAATATCTTTCAGCAAGATACAAACTGTGTCAAAAGAATAA
Upstream 100 bases:
>100_bases AGAGTCTGTTTCATATACTTTAATGTGTATTTACTTTAACACTTGTTGTGTAAAAGTCATATTATATCATTAAAGTTAAA TATGGGGAGGTGGGGGAATA
Downstream 100 bases:
>100_bases GTTTATTATAGAATTTAATGGGTATTTATGTATAATAAAAAGCAAGAACTTTAATAGGTTTTTGCTTTTTTTGTAAATAT ATATAAATTAAATTCTTATT
Product: ATP-binding protein
Products: NA
Alternate protein names: ATP-dependent protease La homolog [H]
Number of amino acids: Translated: 745; Mature: 745
Protein sequence:
>745_residues MKYNNTSEINPLDYILGQERAVEAMELGLKINNPAYNIYIAGEPGTGKSTYALKVLNEYASKKNTHKDWCYIYNFENPRE PIIVELEKGFGRELKKDMEKLIESLLEDFKNAFESENFEIEKNKLLDEYEIEKDMLLKQIKKYGEEKGFKLKQSKMGIVF IPLKEEEDESDESDEEFYKAKRELENMAIQVVYKIRNLEEIAEKAVLELEEEIAKLVVEPHIKRLCEKYENYDKIQTYLE NIKKDIIEYMYLFYLDEEELKDKYDKEHFIKYKINLFVDNGSSKNKESAPVVVEINPSPANLFGKAEYDYANGNIKTDFT KLLSGAFHRANGGYLVLYADQLLKYTMSWEILKKTLQTKKVILETQTAIKPENMPLDVKLVLIGSHYIYDILYRYDEDFE KYFKVFVDFDSEMDKNEDNEEGIARFIAYQCDKNNLRHFTKSAVEEVIKFSTRLSGDLEKLSTKFNKIMEVVIEGSAYAE FRNSEYTEQCDVKKAISEKRKRINRVETHMDESIENGFTLIETEGRKVGVINGLSVLSTGEYSFGRASRITATTSPGSKG IVNIEREVNMSGSIHNKGVLILGGYLSENFAQDLLLSLNAYVCFEQNYGGIDGDSASSAELYVLLSSLSGVSIKQNIAVT GSINQKGDIQVVGGISEKIEGFYSICKTKGLNGEQGVIIPRKNQRNLVLSDEVNDAVRDGKFKIYTVERVEEAIEILTDV KFEEIKKLVKEKLISFSKIQTVSKE
Sequences:
>Translated_745_residues MKYNNTSEINPLDYILGQERAVEAMELGLKINNPAYNIYIAGEPGTGKSTYALKVLNEYASKKNTHKDWCYIYNFENPRE PIIVELEKGFGRELKKDMEKLIESLLEDFKNAFESENFEIEKNKLLDEYEIEKDMLLKQIKKYGEEKGFKLKQSKMGIVF IPLKEEEDESDESDEEFYKAKRELENMAIQVVYKIRNLEEIAEKAVLELEEEIAKLVVEPHIKRLCEKYENYDKIQTYLE NIKKDIIEYMYLFYLDEEELKDKYDKEHFIKYKINLFVDNGSSKNKESAPVVVEINPSPANLFGKAEYDYANGNIKTDFT KLLSGAFHRANGGYLVLYADQLLKYTMSWEILKKTLQTKKVILETQTAIKPENMPLDVKLVLIGSHYIYDILYRYDEDFE KYFKVFVDFDSEMDKNEDNEEGIARFIAYQCDKNNLRHFTKSAVEEVIKFSTRLSGDLEKLSTKFNKIMEVVIEGSAYAE FRNSEYTEQCDVKKAISEKRKRINRVETHMDESIENGFTLIETEGRKVGVINGLSVLSTGEYSFGRASRITATTSPGSKG IVNIEREVNMSGSIHNKGVLILGGYLSENFAQDLLLSLNAYVCFEQNYGGIDGDSASSAELYVLLSSLSGVSIKQNIAVT GSINQKGDIQVVGGISEKIEGFYSICKTKGLNGEQGVIIPRKNQRNLVLSDEVNDAVRDGKFKIYTVERVEEAIEILTDV KFEEIKKLVKEKLISFSKIQTVSKE >Mature_745_residues MKYNNTSEINPLDYILGQERAVEAMELGLKINNPAYNIYIAGEPGTGKSTYALKVLNEYASKKNTHKDWCYIYNFENPRE PIIVELEKGFGRELKKDMEKLIESLLEDFKNAFESENFEIEKNKLLDEYEIEKDMLLKQIKKYGEEKGFKLKQSKMGIVF IPLKEEEDESDESDEEFYKAKRELENMAIQVVYKIRNLEEIAEKAVLELEEEIAKLVVEPHIKRLCEKYENYDKIQTYLE NIKKDIIEYMYLFYLDEEELKDKYDKEHFIKYKINLFVDNGSSKNKESAPVVVEINPSPANLFGKAEYDYANGNIKTDFT KLLSGAFHRANGGYLVLYADQLLKYTMSWEILKKTLQTKKVILETQTAIKPENMPLDVKLVLIGSHYIYDILYRYDEDFE KYFKVFVDFDSEMDKNEDNEEGIARFIAYQCDKNNLRHFTKSAVEEVIKFSTRLSGDLEKLSTKFNKIMEVVIEGSAYAE FRNSEYTEQCDVKKAISEKRKRINRVETHMDESIENGFTLIETEGRKVGVINGLSVLSTGEYSFGRASRITATTSPGSKG IVNIEREVNMSGSIHNKGVLILGGYLSENFAQDLLLSLNAYVCFEQNYGGIDGDSASSAELYVLLSSLSGVSIKQNIAVT GSINQKGDIQVVGGISEKIEGFYSICKTKGLNGEQGVIIPRKNQRNLVLSDEVNDAVRDGKFKIYTVERVEEAIEILTDV KFEEIKKLVKEKLISFSKIQTVSKE
Specific function: Unknown
COG id: COG1067
COG function: function code O; Predicted ATP-dependent protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S16 family [H]
Homologues:
Organism=Escherichia coli, GI1787188, Length=420, Percent_Identity=30.7142857142857, Blast_Score=204, Evalue=1e-53,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008269 - InterPro: IPR001984 - InterPro: IPR020568 [H]
Pfam domain/function: PF05362 Lon_C [H]
EC number: 3.4.21.- [C]
Molecular weight: Translated: 85494; Mature: 85494
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYNNTSEINPLDYILGQERAVEAMELGLKINNPAYNIYIAGEPGTGKSTYALKVLNEYA CCCCCCCCCCHHHHHHCCHHHHHHHHCCEEECCCEEEEEEECCCCCCCCHHHHHHHHHHH SKKNTHKDWCYIYNFENPREPIIVELEKGFGRELKKDMEKLIESLLEDFKNAFESENFEI HCCCCCCCEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEE EKNKLLDEYEIEKDMLLKQIKKYGEEKGFKLKQSKMGIVFIPLKEEEDESDESDEEFYKA HHHHCCHHHHHHHHHHHHHHHHHCHHCCCEEECCCCCEEEEECCCCCCCCCCCHHHHHHH KRELENMAIQVVYKIRNLEEIAEKAVLELEEEIAKLVVEPHIKRLCEKYENYDKIQTYLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH NIKKDIIEYMYLFYLDEEELKDKYDKEHFIKYKINLFVDNGSSKNKESAPVVVEINPSPA HHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCCCEEEEECCCCC NLFGKAEYDYANGNIKTDFTKLLSGAFHRANGGYLVLYADQLLKYTMSWEILKKTLQTKK CCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH VILETQTAIKPENMPLDVKLVLIGSHYIYDILYRYDEDFEKYFKVFVDFDSEMDKNEDNE HHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCH EGIARFIAYQCDKNNLRHFTKSAVEEVIKFSTRLSGDLEKLSTKFNKIMEVVIEGSAYAE HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHH FRNSEYTEQCDVKKAISEKRKRINRVETHMDESIENGFTLIETEGRKVGVINGLSVLSTG HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEECCEEEECC EYSFGRASRITATTSPGSKGIVNIEREVNMSGSIHNKGVLILGGYLSENFAQDLLLSLNA CCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCE YVCFEQNYGGIDGDSASSAELYVLLSSLSGVSIKQNIAVTGSINQKGDIQVVGGISEKIE EEEEECCCCCCCCCCCCCCEEEEEEHHCCCCEEECCEEEEECCCCCCCEEEECCHHHHHH GFYSICKTKGLNGEQGVIIPRKNQRNLVLSDEVNDAVRDGKFKIYTVERVEEAIEILTDV HHHHHHHHCCCCCCCCEEEECCCCCCEEEECCCHHHHHCCCEEEEEHHHHHHHHHHHHCC KFEEIKKLVKEKLISFSKIQTVSKE CHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKYNNTSEINPLDYILGQERAVEAMELGLKINNPAYNIYIAGEPGTGKSTYALKVLNEYA CCCCCCCCCCHHHHHHCCHHHHHHHHCCEEECCCEEEEEEECCCCCCCCHHHHHHHHHHH SKKNTHKDWCYIYNFENPREPIIVELEKGFGRELKKDMEKLIESLLEDFKNAFESENFEI HCCCCCCCEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEE EKNKLLDEYEIEKDMLLKQIKKYGEEKGFKLKQSKMGIVFIPLKEEEDESDESDEEFYKA HHHHCCHHHHHHHHHHHHHHHHHCHHCCCEEECCCCCEEEEECCCCCCCCCCCHHHHHHH KRELENMAIQVVYKIRNLEEIAEKAVLELEEEIAKLVVEPHIKRLCEKYENYDKIQTYLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH NIKKDIIEYMYLFYLDEEELKDKYDKEHFIKYKINLFVDNGSSKNKESAPVVVEINPSPA HHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCCCEEEEECCCCC NLFGKAEYDYANGNIKTDFTKLLSGAFHRANGGYLVLYADQLLKYTMSWEILKKTLQTKK CCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH VILETQTAIKPENMPLDVKLVLIGSHYIYDILYRYDEDFEKYFKVFVDFDSEMDKNEDNE HHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCH EGIARFIAYQCDKNNLRHFTKSAVEEVIKFSTRLSGDLEKLSTKFNKIMEVVIEGSAYAE HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHH FRNSEYTEQCDVKKAISEKRKRINRVETHMDESIENGFTLIETEGRKVGVINGLSVLSTG HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEECCEEEECC EYSFGRASRITATTSPGSKGIVNIEREVNMSGSIHNKGVLILGGYLSENFAQDLLLSLNA CCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCE YVCFEQNYGGIDGDSASSAELYVLLSSLSGVSIKQNIAVTGSINQKGDIQVVGGISEKIE EEEEECCCCCCCCCCCCCCEEEEEEHHCCCCEEECCEEEEECCCCCCCEEEECCHHHHHH GFYSICKTKGLNGEQGVIIPRKNQRNLVLSDEVNDAVRDGKFKIYTVERVEEAIEILTDV HHHHHHHHCCCCCCCCEEEECCCCCCEEEECCCHHHHHCCCEEEEEHHHHHHHHHHHHCC KFEEIKKLVKEKLISFSKIQTVSKE CHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]