| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is orf23
Identifier: 126698072
GI number: 126698072
Start: 585695
End: 586009
Strand: Direct
Name: orf23
Synonym: CD0496
Alternate gene names: NA
Gene position: 585695-586009 (Clockwise)
Preceding gene: 126698071
Following gene: 126698073
Centisome position: 13.65
GC content: 39.37
Gene sequence:
>315_bases ATGGAACTTAAATTTGTCATTCCCAACATGGAAAAAACATTCGGAAACTTAGAATTTGCTGGCGAGGATAAAATCGTACA GCGAAGAATCAACGGACAGCTTACTATCTTATCAAGAAGCTATAACCTCTATTCAGATGTTCAAAGAGCAGATGATATTG TGGTGGTACTTCCTGCTGAAGCTGGCGAAAAACATTTCAGTTTTGAAGAAAAAGTAAAGCTCGTCAATCCACGTATTACT GCCGAGGGCTACAAAATCGGTACTCGTGGCTTTACGAACTACATCTTAGAAGCTGACGACATGATTAAGGAATAG
Upstream 100 bases:
>100_bases TGATACCACGAAAGCAAAAAATCAAGGTCGTTCCCCACCCAATAGACCATCAAACAAATTAGATTCATGAAACCATTAAA CAGAAAGGATAGGTAAAAAT
Downstream 100 bases:
>100_bases AAAGAAAGAGAGGAAAACATTATGAGATTAGCCAATGGCATTGTTTTAGAAAAAGACGCTACGTTTGGGGAATTAAAGTT CTCTGCACTCCGACGTGAAG
Product: conjugative transposon protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 104; Mature: 104
Protein sequence:
>104_residues MELKFVIPNMEKTFGNLEFAGEDKIVQRRINGQLTILSRSYNLYSDVQRADDIVVVLPAEAGEKHFSFEEKVKLVNPRIT AEGYKIGTRGFTNYILEADDMIKE
Sequences:
>Translated_104_residues MELKFVIPNMEKTFGNLEFAGEDKIVQRRINGQLTILSRSYNLYSDVQRADDIVVVLPAEAGEKHFSFEEKVKLVNPRIT AEGYKIGTRGFTNYILEADDMIKE >Mature_104_residues MELKFVIPNMEKTFGNLEFAGEDKIVQRRINGQLTILSRSYNLYSDVQRADDIVVVLPAEAGEKHFSFEEKVKLVNPRIT AEGYKIGTRGFTNYILEADDMIKE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11915; Mature: 11915
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELKFVIPNMEKTFGNLEFAGEDKIVQRRINGQLTILSRSYNLYSDVQRADDIVVVLPAE CCEEEECCCCHHHCCCEEECCCCHHHHHHCCCEEEEEECCCCHHHHHHCCCCEEEEEECC AGEKHFSFEEKVKLVNPRITAEGYKIGTRGFTNYILEADDMIKE CCCCCCCHHHHEEECCCEEECCCEEECCCCCHHEEECCHHHHCC >Mature Secondary Structure MELKFVIPNMEKTFGNLEFAGEDKIVQRRINGQLTILSRSYNLYSDVQRADDIVVVLPAE CCEEEECCCCHHHCCCEEECCCCHHHHHHCCCEEEEEECCCCHHHHHHCCCCEEEEEECC AGEKHFSFEEKVKLVNPRITAEGYKIGTRGFTNYILEADDMIKE CCCCCCCHHHHEEECCCEEECCCEEECCCCCHHEEECCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA