| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
Click here to switch to the map view.
The map label for this gene is bglG [H]
Identifier: 126697959
GI number: 126697959
Start: 460765
End: 461601
Strand: Direct
Name: bglG [H]
Synonym: CD0390
Alternate gene names: 126697959
Gene position: 460765-461601 (Clockwise)
Preceding gene: 126697958
Following gene: 126697960
Centisome position: 10.74
GC content: 28.08
Gene sequence:
>837_bases ATGAACTACATAATAAAGAAAGTTTTGAACTCGAGCGTTGTTTTAGTTCATGACACAAAGGATAATGAATTTATTTTGCT AGGGAAAGGAATTGGATATGGTAAAAAAACAGGAGAATATATTTGTGGTTCCAATGATAATCAAATGTTTGTCCCTGTTG AAAATACAAAATCAAAACAATTTTTAGAATTAATGGATGATATTCCTGTCGACATTTTAAAGATAACACAGGAAATAATA GTAGAGGCAGAAAAGTTATTGAACTCATCTTTTAATAAAAACTTATACTTAATATTAGCAGACCATTTTAACTTTGCAAT TGAAAGGATGCGTAAAGGAATAAAAATTACAAATCGAGTATTTTGGGAAATAAAAAATTATTATCCAAATGAGTTTAAGG TTGGAATGGTTGCAATTTATATGGTAGAGGAGAGATTGGGCATTCAATTACCAGAGGAAGAAGCAGCTAACATTGCTTTC CATTTTGCAAATGCTATGGCTTCAGATGGAAATTCATATGATACGATTAAGTATGCCAAAGTAATTGGAGAAATAATTAA TATTTTTATTTTTTCTTTGAATAGAACCTTAGATAAAAAGAGTATGCATTATATGAGATTTATAACACATATAAAATTTT TTGTGGAAAGATTTTTTTCAGATAGTATGTTAAGCAGTGGTGATGATTTATTATTTAATCAAATGAAAAGGTCAAATCCA AAAGAAATGTTAATTGCATTAAAAGTTAGAGATTTTTTAGAAAAGAAATATGGAAAAAAGTTAACAAATGAGGAAATAGC TTTCTTGGTTGTCCATATCGCACGAGTTAAGCAATAG
Upstream 100 bases:
>100_bases CATATAATCGATATAAGAAAGATAGTTTTTATTGGTATAAAAAGGTAATTGAAAATAATAGTATAGATTTTAAATGACCA ATAGAAGGTGAGCAAATAAA
Downstream 100 bases:
>100_bases AGTAAATTACAGCAATAGAGTGAATTACTAATATTATCTTATACGTCTACATGGTAGAAAATTGAAAGAAGGTAAAGTGT ATAAAGAAACTGAGACATAT
Product: beta-glucoside bgl operon transcription antiterminator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 278; Mature: 278
Protein sequence:
>278_residues MNYIIKKVLNSSVVLVHDTKDNEFILLGKGIGYGKKTGEYICGSNDNQMFVPVENTKSKQFLELMDDIPVDILKITQEII VEAEKLLNSSFNKNLYLILADHFNFAIERMRKGIKITNRVFWEIKNYYPNEFKVGMVAIYMVEERLGIQLPEEEAANIAF HFANAMASDGNSYDTIKYAKVIGEIINIFIFSLNRTLDKKSMHYMRFITHIKFFVERFFSDSMLSSGDDLLFNQMKRSNP KEMLIALKVRDFLEKKYGKKLTNEEIAFLVVHIARVKQ
Sequences:
>Translated_278_residues MNYIIKKVLNSSVVLVHDTKDNEFILLGKGIGYGKKTGEYICGSNDNQMFVPVENTKSKQFLELMDDIPVDILKITQEII VEAEKLLNSSFNKNLYLILADHFNFAIERMRKGIKITNRVFWEIKNYYPNEFKVGMVAIYMVEERLGIQLPEEEAANIAF HFANAMASDGNSYDTIKYAKVIGEIINIFIFSLNRTLDKKSMHYMRFITHIKFFVERFFSDSMLSSGDDLLFNQMKRSNP KEMLIALKVRDFLEKKYGKKLTNEEIAFLVVHIARVKQ >Mature_278_residues MNYIIKKVLNSSVVLVHDTKDNEFILLGKGIGYGKKTGEYICGSNDNQMFVPVENTKSKQFLELMDDIPVDILKITQEII VEAEKLLNSSFNKNLYLILADHFNFAIERMRKGIKITNRVFWEIKNYYPNEFKVGMVAIYMVEERLGIQLPEEEAANIAF HFANAMASDGNSYDTIKYAKVIGEIINIFIFSLNRTLDKKSMHYMRFITHIKFFVERFFSDSMLSSGDDLLFNQMKRSNP KEMLIALKVRDFLEKKYGKKLTNEEIAFLVVHIARVKQ
Specific function: Mediates positive regulation of the glucanase operon (licST) by functioning as an antiterminator factor of transcription. Prevents termination at terminator lic-t [H]
COG id: COG3711
COG function: function code K; Transcriptional antiterminator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 PRD domains [H]
Homologues:
Organism=Escherichia coli, GI1790160, Length=278, Percent_Identity=30.5755395683453, Blast_Score=168, Evalue=4e-43,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004341 - InterPro: IPR011608 - InterPro: IPR001550 [H]
Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]
EC number: NA
Molecular weight: Translated: 32302; Mature: 32302
Theoretical pI: Translated: 9.08; Mature: 9.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYIIKKVLNSSVVLVHDTKDNEFILLGKGIGYGKKTGEYICGSNDNQMFVPVENTKSKQ CCHHHHHHHCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCHHH FLELMDDIPVDILKITQEIIVEAEKLLNSSFNKNLYLILADHFNFAIERMRKGIKITNRV HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHCCCHHHHHH FWEIKNYYPNEFKVGMVAIYMVEERLGIQLPEEEAANIAFHFANAMASDGNSYDTIKYAK HHHHHHCCCCCEEHHEEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH VIGEIINIFIFSLNRTLDKKSMHYMRFITHIKFFVERFFSDSMLSSGDDLLFNQMKRSNP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCH KEMLIALKVRDFLEKKYGKKLTNEEIAFLVVHIARVKQ HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure MNYIIKKVLNSSVVLVHDTKDNEFILLGKGIGYGKKTGEYICGSNDNQMFVPVENTKSKQ CCHHHHHHHCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCHHH FLELMDDIPVDILKITQEIIVEAEKLLNSSFNKNLYLILADHFNFAIERMRKGIKITNRV HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHCCCHHHHHH FWEIKNYYPNEFKVGMVAIYMVEERLGIQLPEEEAANIAFHFANAMASDGNSYDTIKYAK HHHHHHCCCCCEEHHEEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH VIGEIINIFIFSLNRTLDKKSMHYMRFITHIKFFVERFFSDSMLSSGDDLLFNQMKRSNP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCH KEMLIALKVRDFLEKKYGKKLTNEEIAFLVVHIARVKQ HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8606172; 8969509; 9384377; 6087283 [H]