| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126697915
Identifier: 126697915
GI number: 126697915
Start: 419403
End: 420134
Strand: Direct
Name: 126697915
Synonym: CD0343
Alternate gene names: NA
Gene position: 419403-420134 (Clockwise)
Preceding gene: 126697911
Following gene: 126697916
Centisome position: 9.78
GC content: 23.63
Gene sequence:
>732_bases ATGACTAGTATAAAAAATAAAGATATTTTAAATTGTATAGATTATTCCATTAAAAATAAGCTCTTTGACAAACTAAATGA TGTATATAAGTCCTTGCCAGTAGGAAATTGTTCTGGATGTGGAAATTGTTGTATGGAGTCAGTAGGTATAAATTTAATTG AGTTTTTGAATATATTTTGTTATCTTGAAGATAGAGTTGATTTAAAAAAAAGCTGTATAAGTAAAATATTAGATTATTAT TTTGAGGAGTATACAAGAAAGAACCCATGTCCATTTAAAGATACTAATAATAGATGTTTAATATATGAAGTTAGACCATT AAATTGTAGGATGTTTGGACATTGGAAAAAAGAGGATTATAATAAAAATTTAGATAATGTTATTGAGAAAAATAATAACT ATAGAGAGTTAATGAAAAAGCAATATGGATTTGAAATAAATGATGAAGTAGTAAATTACAGGATAGATTATTGTGATAGA TTTATTCCAAATAAAGATTATTTAAGTAAATCTAAGAGATTAAGCTTTTTTGATGAGCTTATGATATTAGACTCAAGTAT TTATTCAAGTGGAAATATAGATATAGACTTTAGGGATAGAGGTATAGTTGAATATTTTATAGAGTCATTACTTTATAGAA ATTTAGCATATAATGTGAAAATAAGGATATCTAAAGAATACAAAATAAGAAAAAGAACTATAGATAGAATAAAAAGGATT GTTCTTGTATAG
Upstream 100 bases:
>100_bases ATATCTATTCATAAAATACCTCCATATGCGATTAAATTTAAAAAATATGTTATAATAATTGTTTGTATTAACTTAATAAT TATAACAAGGAGTAATAATA
Downstream 100 bases:
>100_bases TTTTATATTAGTAAGTAATAAATTGTATCATAAATATTGTCAAAATGAGGTGAAGAAGGTGAATCTTACAAAAGTAAAAG GAAATACCTTTTTTATAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 243; Mature: 242
Protein sequence:
>243_residues MTSIKNKDILNCIDYSIKNKLFDKLNDVYKSLPVGNCSGCGNCCMESVGINLIEFLNIFCYLEDRVDLKKSCISKILDYY FEEYTRKNPCPFKDTNNRCLIYEVRPLNCRMFGHWKKEDYNKNLDNVIEKNNNYRELMKKQYGFEINDEVVNYRIDYCDR FIPNKDYLSKSKRLSFFDELMILDSSIYSSGNIDIDFRDRGIVEYFIESLLYRNLAYNVKIRISKEYKIRKRTIDRIKRI VLV
Sequences:
>Translated_243_residues MTSIKNKDILNCIDYSIKNKLFDKLNDVYKSLPVGNCSGCGNCCMESVGINLIEFLNIFCYLEDRVDLKKSCISKILDYY FEEYTRKNPCPFKDTNNRCLIYEVRPLNCRMFGHWKKEDYNKNLDNVIEKNNNYRELMKKQYGFEINDEVVNYRIDYCDR FIPNKDYLSKSKRLSFFDELMILDSSIYSSGNIDIDFRDRGIVEYFIESLLYRNLAYNVKIRISKEYKIRKRTIDRIKRI VLV >Mature_242_residues TSIKNKDILNCIDYSIKNKLFDKLNDVYKSLPVGNCSGCGNCCMESVGINLIEFLNIFCYLEDRVDLKKSCISKILDYYF EEYTRKNPCPFKDTNNRCLIYEVRPLNCRMFGHWKKEDYNKNLDNVIEKNNNYRELMKKQYGFEINDEVVNYRIDYCDRF IPNKDYLSKSKRLSFFDELMILDSSIYSSGNIDIDFRDRGIVEYFIESLLYRNLAYNVKIRISKEYKIRKRTIDRIKRIV LV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29119; Mature: 28988
Theoretical pI: Translated: 8.56; Mature: 8.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 4.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSIKNKDILNCIDYSIKNKLFDKLNDVYKSLPVGNCSGCGNCCMESVGINLIEFLNIFC CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHH YLEDRVDLKKSCISKILDYYFEEYTRKNPCPFKDTNNRCLIYEVRPLNCRMFGHWKKEDY HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEECCCCHHHH NKNLDNVIEKNNNYRELMKKQYGFEINDEVVNYRIDYCDRFIPNKDYLSKSKRLSFFDEL CCCHHHHHHCCCCHHHHHHHHCCCCCCHHHHHEEHHHHHHHCCCHHHHHHHHHHHHHHHH MILDSSIYSSGNIDIDFRDRGIVEYFIESLLYRNLAYNVKIRISKEYKIRKRTIDRIKRI HHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHH VLV HCC >Mature Secondary Structure TSIKNKDILNCIDYSIKNKLFDKLNDVYKSLPVGNCSGCGNCCMESVGINLIEFLNIFC CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHH YLEDRVDLKKSCISKILDYYFEEYTRKNPCPFKDTNNRCLIYEVRPLNCRMFGHWKKEDY HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEECCCCHHHH NKNLDNVIEKNNNYRELMKKQYGFEINDEVVNYRIDYCDRFIPNKDYLSKSKRLSFFDEL CCCHHHHHHCCCCHHHHHHHHCCCCCCHHHHHEEHHHHHHHCCCHHHHHHHHHHHHHHHH MILDSSIYSSGNIDIDFRDRGIVEYFIESLLYRNLAYNVKIRISKEYKIRKRTIDRIKRI HHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHH VLV HCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA