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The map label for this gene is yccH [H]

Identifier: 126697911

GI number: 126697911

Start: 412406

End: 413143

Strand: Direct

Name: yccH [H]

Synonym: CD0339

Alternate gene names: 126697911

Gene position: 412406-413143 (Clockwise)

Preceding gene: 126697910

Following gene: 126697915

Centisome position: 9.61

GC content: 25.2

Gene sequence:

>738_bases
ATGATAAAAGTTTTGATTTGTGATGATGATAAGATTGTAAGAGATGATATAGCAAATATAGCTAAAGAGTCTGGATATGT
AGATTATGTTAAAAAAGTTAAGGATGGTATAGAGGCAATTGAATTTATAAAAAATGAGAAAATAGATTTATTGATTATTG
ACATTGATATGCCATATAAAAATGGGATTGATTCTGCTGAAGAAATTCTTTCTATAGATAAGGATATACATATAGTATTT
GTGACGGGTTTCGCTGATTATAGTCTTGAAAGCTTTAAAGTGCATCCTATAGATTTTGTAGTTAAACCATTTAAAAAAGA
AAAAATACTTGATTCAATTAACATAGCAATAGACCATATTAACTCCCATAAGATTGCTAATAATAATTTTATAGAAGACA
CCCTTTTTGTATATAAAATAAGGAAGCAGATACATATGATTAATTTTGATGATATAGTTATGTTTGAGAAAAATTCAAGA
GCAATTAATCTACACACTAAAGATGAAGATATAATAAAGTTTTATGAGAACTTTGATGATTTAAAAAAACGCCTACCTCC
TAATTTCTTTATGACCCATAGACAATACATAGTAAATCTAAGATTTATACATAAGGTTATACCTATAAATAAATCTTCAT
TAGAGATAAGGTTTATAAATTTTCAAGAAAATGCCATATTAAACAAATCTCTAGAAAAAGATTTTTTATATAGATTTTAT
AGGGTTAAAAGATTCTAG

Upstream 100 bases:

>100_bases
AGATAAGTATGATTATAGTATACTTGTAAATAGTGATGATTTTTTAACTGAATTTGTAATCTTAATCCCAAAATATTATT
AGTTAGGAGGAGAAAAGTCT

Downstream 100 bases:

>100_bases
TGAAAATAGAAGGAAAATACTTTTTGTGTGACATAATAAGTACCGTAAAGATAATGTATAAGAGAAGTTTATATAAAAAT
TATTTGTAATTATGATTTAA

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MIKVLICDDDKIVRDDIANIAKESGYVDYVKKVKDGIEAIEFIKNEKIDLLIIDIDMPYKNGIDSAEEILSIDKDIHIVF
VTGFADYSLESFKVHPIDFVVKPFKKEKILDSINIAIDHINSHKIANNNFIEDTLFVYKIRKQIHMINFDDIVMFEKNSR
AINLHTKDEDIIKFYENFDDLKKRLPPNFFMTHRQYIVNLRFIHKVIPINKSSLEIRFINFQENAILNKSLEKDFLYRFY
RVKRF

Sequences:

>Translated_245_residues
MIKVLICDDDKIVRDDIANIAKESGYVDYVKKVKDGIEAIEFIKNEKIDLLIIDIDMPYKNGIDSAEEILSIDKDIHIVF
VTGFADYSLESFKVHPIDFVVKPFKKEKILDSINIAIDHINSHKIANNNFIEDTLFVYKIRKQIHMINFDDIVMFEKNSR
AINLHTKDEDIIKFYENFDDLKKRLPPNFFMTHRQYIVNLRFIHKVIPINKSSLEIRFINFQENAILNKSLEKDFLYRFY
RVKRF
>Mature_245_residues
MIKVLICDDDKIVRDDIANIAKESGYVDYVKKVKDGIEAIEFIKNEKIDLLIIDIDMPYKNGIDSAEEILSIDKDIHIVF
VTGFADYSLESFKVHPIDFVVKPFKKEKILDSINIAIDHINSHKIANNNFIEDTLFVYKIRKQIHMINFDDIVMFEKNSR
AINLHTKDEDIIKFYENFDDLKKRLPPNFFMTHRQYIVNLRFIHKVIPINKSSLEIRFINFQENAILNKSLEKDFLYRFY
RVKRF

Specific function: Could be member of the two-component regulatory system yccG/yccH [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=240, Percent_Identity=23.75, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87082052, Length=214, Percent_Identity=25.7009345794392, Blast_Score=74, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 29100; Mature: 29100

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKVLICDDDKIVRDDIANIAKESGYVDYVKKVKDGIEAIEFIKNEKIDLLIIDIDMPYK
CEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
NGIDSAEEILSIDKDIHIVFVTGFADYSLESFKVHPIDFVVKPFKKEKILDSINIAIDHI
CCCCHHHHHHHCCCCEEEEEEECCCCCCCCCEEECCHHHEECCCHHHHHHHHHHEEEEEC
NSHKIANNNFIEDTLFVYKIRKQIHMINFDDIVMFEKNSRAINLHTKDEDIIKFYENFDD
CCCEECCCCCHHHHHHHHHHHHHHEEECCCCEEEEECCCCEEEEECCCHHHHHHHHCHHH
LKKRLPPNFFMTHRQYIVNLRFIHKVIPINKSSLEIRFINFQENAILNKSLEKDFLYRFY
HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHH
RVKRF
HHHCC
>Mature Secondary Structure
MIKVLICDDDKIVRDDIANIAKESGYVDYVKKVKDGIEAIEFIKNEKIDLLIIDIDMPYK
CEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
NGIDSAEEILSIDKDIHIVFVTGFADYSLESFKVHPIDFVVKPFKKEKILDSINIAIDHI
CCCCHHHHHHHCCCCEEEEEEECCCCCCCCCEEECCHHHEECCCHHHHHHHHHHEEEEEC
NSHKIANNNFIEDTLFVYKIRKQIHMINFDDIVMFEKNSRAINLHTKDEDIIKFYENFDD
CCCEECCCCCHHHHHHHHHHHHHHEEECCCCEEEEECCCCEEEEECCCHHHHHHHHCHHH
LKKRLPPNFFMTHRQYIVNLRFIHKVIPINKSSLEIRFINFQENAILNKSLEKDFLYRFY
HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHH
RVKRF
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9106203; 9274031; 9384377 [H]