| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126697902
Identifier: 126697902
GI number: 126697902
Start: 397788
End: 398540
Strand: Direct
Name: 126697902
Synonym: CD0330
Alternate gene names: NA
Gene position: 397788-398540 (Clockwise)
Preceding gene: 126697901
Following gene: 126697903
Centisome position: 9.27
GC content: 29.88
Gene sequence:
>753_bases ATGAAATTAGGATTATGTTTAGAAGGTGGAGGAGCAAAAGGGGCTTATCAAGCAGGAGTAGTTAAAGCCTTGTATGATGG AGGAATAAATAAATTTTATTCGATTTCAGGGACATCAATAGGAGCAATAAATGGATATTATTTGTACACAGGGAATGTTG ATAACTTGGAGAAAATGTGGACAAATATAAAAGATATCCAGAATGGAAATGTAAAAATAGTAAATAATACTGTGGATAAT TCTCCTGCTATAGACAACCTAAGGGAACTAGATGATAGTAATATAGAAGAAATGAACTTTTATGTTAATTATGTTGAAGT TGATAATAAAGTAGTATCAGAAAAGATTGTTGACGTATCAAAAATGCCTCGTAATGAAGCCATTATCAGCATTTCATACA GTGGGTTGTTACCATCAAATCCAAACGCAACTCTTGGATTTAAAGAACAATTTGTGAAAGATGTGCAAGAAGGAATTTAT GATGGTTTCAAATTAGATGGAGGTTTAATTAGGAGTGCATTAATTGAACCATTAATTGGGGATAATGTGGATAAAATTAT TTTAATATCCACAAAATATAATTATGAGTTGCCAGAAGATATTAAAAAAGTATATGATGAAGATAAAATAATAGTAGTTA GACCTAATACTCAATTTGCTCCTAAAGACACGCTTAACTTTGATGATGAGTTTTGTAAAACTATTTATCAAGAAGGATAT GAAATAGGAAAAAATATACTTGATAGACTTTAA
Upstream 100 bases:
>100_bases AAGAGAATTAGGAAATGTTGAGGACCACTATAGTATATATAAAACATTTAGTAAGTTTTTTGAAATATAAATATAAGATA AACAATTTGGAGATGAGACT
Downstream 100 bases:
>100_bases TTTAGAGTATAATATAATAAATATAATTATGTAATTTAACTAATGAAAAGGAAGGTAATAAATTATGGAAAATAAAAATC CTATAGTAACTATAGAAATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 250; Mature: 250
Protein sequence:
>250_residues MKLGLCLEGGGAKGAYQAGVVKALYDGGINKFYSISGTSIGAINGYYLYTGNVDNLEKMWTNIKDIQNGNVKIVNNTVDN SPAIDNLRELDDSNIEEMNFYVNYVEVDNKVVSEKIVDVSKMPRNEAIISISYSGLLPSNPNATLGFKEQFVKDVQEGIY DGFKLDGGLIRSALIEPLIGDNVDKIILISTKYNYELPEDIKKVYDEDKIIVVRPNTQFAPKDTLNFDDEFCKTIYQEGY EIGKNILDRL
Sequences:
>Translated_250_residues MKLGLCLEGGGAKGAYQAGVVKALYDGGINKFYSISGTSIGAINGYYLYTGNVDNLEKMWTNIKDIQNGNVKIVNNTVDN SPAIDNLRELDDSNIEEMNFYVNYVEVDNKVVSEKIVDVSKMPRNEAIISISYSGLLPSNPNATLGFKEQFVKDVQEGIY DGFKLDGGLIRSALIEPLIGDNVDKIILISTKYNYELPEDIKKVYDEDKIIVVRPNTQFAPKDTLNFDDEFCKTIYQEGY EIGKNILDRL >Mature_250_residues MKLGLCLEGGGAKGAYQAGVVKALYDGGINKFYSISGTSIGAINGYYLYTGNVDNLEKMWTNIKDIQNGNVKIVNNTVDN SPAIDNLRELDDSNIEEMNFYVNYVEVDNKVVSEKIVDVSKMPRNEAIISISYSGLLPSNPNATLGFKEQFVKDVQEGIY DGFKLDGGLIRSALIEPLIGDNVDKIILISTKYNYELPEDIKKVYDEDKIIVVRPNTQFAPKDTLNFDDEFCKTIYQEGY EIGKNILDRL
Specific function: Unknown
COG id: COG1752
COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27912; Mature: 27912
Theoretical pI: Translated: 4.34; Mature: 4.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLGLCLEGGGAKGAYQAGVVKALYDGGINKFYSISGTSIGAINGYYLYTGNVDNLEKMW CCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCEEECCCCEEEEECCCCHHHHHH TNIKDIQNGNVKIVNNTVDNSPAIDNLRELDDSNIEEMNFYVNYVEVDNKVVSEKIVDVS HHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEECCHHHHHHHHHHH KMPRNEAIISISYSGLLPSNPNATLGFKEQFVKDVQEGIYDGFKLDGGLIRSALIEPLIG HCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCHHHHHHHHHHHHHC DNVDKIILISTKYNYELPEDIKKVYDEDKIIVVRPNTQFAPKDTLNFDDEFCKTIYQEGY CCCCEEEEEEECCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH EIGKNILDRL HHHHHHHHCC >Mature Secondary Structure MKLGLCLEGGGAKGAYQAGVVKALYDGGINKFYSISGTSIGAINGYYLYTGNVDNLEKMW CCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCEEECCCCEEEEECCCCHHHHHH TNIKDIQNGNVKIVNNTVDNSPAIDNLRELDDSNIEEMNFYVNYVEVDNKVVSEKIVDVS HHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEECCHHHHHHHHHHH KMPRNEAIISISYSGLLPSNPNATLGFKEQFVKDVQEGIYDGFKLDGGLIRSALIEPLIG HCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCHHHHHHHHHHHHHC DNVDKIILISTKYNYELPEDIKKVYDEDKIIVVRPNTQFAPKDTLNFDDEFCKTIYQEGY CCCCEEEEEEECCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH EIGKNILDRL HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA