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The map label for this gene is ytjP [H]

Identifier: 126697712

GI number: 126697712

Start: 186311

End: 187363

Strand: Direct

Name: ytjP [H]

Synonym: CD0140

Alternate gene names: 126697712

Gene position: 186311-187363 (Clockwise)

Preceding gene: 126697711

Following gene: 126697713

Centisome position: 4.34

GC content: 29.44

Gene sequence:

>1053_bases
ATGAATATCATAAGTAATAAAATAGATGAGTTAAAAGAAGATTTATTAAGTGATATTATAGATATTGTAAAAATACCTAG
TGTCAAAGGGGAGTCAGAAAATGGCTTCCCTTTTGGCGAAAAAGTAGGGGAGGCACTTAATAAAGCATTAGAAATATCAG
AAAAATTGGGATTTAAGGTTAGAAACTTGGATAATTATATTGGTTATGCAGAGCATGGAGATAGTGATGATTATGTTTGT
GTAATTGGACATGTAGATGTTGTACATGAAGGAGATGGTTGGAAGCATCAGCCTTATAAGGGAGAAGAAACTAATGGAAG
AATTTATGGACGAGGAGTACTAGACAATAAAGGACCTATAATGTCTGCCTTATATGGATTATATGCTATTAAAGAATTAA
ACTTAAAATTAGATAAGAGCGTTAGAATAATATTTGGTACAAATGAAGAAAGTGGATTTGAAGATATACCATATTATTTA
GAAAAAGAAAAAGCACCTATTATGGGATTTACACCAGATTGTAAATATCCTGTTGTATATGGTGAAAAAGGTATGGCAAA
GATTAGAATAAAAAGTAAAATCAATTATGAAGAAGATGTATACCTAGGTTTTATAGAAAATATGTCTGAAAATGTGCTTG
TTACATATAAAGAGCTGAATATAGAAAATAGTGATACTATATTAGATATAAAGGTAAAATACGATTTTAGTTATAAATTG
AAAGATGTATTAGATGAAATAAAAGCTAGTTTTCCAAATAGTATCGATATAGAGGTAATTTCTAATTTTAATCCTGTATA
TTTTGATAAAGAGAGTAATCTTGTTAAAAAGCTTCAGCTAGCTTATGAAAGGGTTACATCATTAGATGGAACTCCAGTAA
CAACTAATGGAGGTACGTATGCAAAAGTAATGCCAAATATAGTTCCGTTTGGACCTTCATTTCCAGGACAAAAAGGAATA
GCTCATAATCCTGATGAATACATGGATATAGAAGATATAATATTAAATGCAAAGATATTTGCAAATGCAATATATGAATT
AGCAAAGGAGTAG

Upstream 100 bases:

>100_bases
GATGGAAGCATATGAGGCTAGAATAAAAGCACCAATAGAAGTAAGTGAGTAAAGTAGTGGTTACATAATTAAAATAGAGT
TTTATAATAAGGAGATTTTT

Downstream 100 bases:

>100_bases
TTATGTTAGAAATAATAGGAATGTCAGTAGAAGACGCTAAAATTATAGAAGATTGTGGTGCAGATAGAATAGAGTTAGTT
AGTGCTTTAACTGAAGGTGG

Product: peptidase

Products: succinate; LL-2,6-diaminoheptanedioate

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MNIISNKIDELKEDLLSDIIDIVKIPSVKGESENGFPFGEKVGEALNKALEISEKLGFKVRNLDNYIGYAEHGDSDDYVC
VIGHVDVVHEGDGWKHQPYKGEETNGRIYGRGVLDNKGPIMSALYGLYAIKELNLKLDKSVRIIFGTNEESGFEDIPYYL
EKEKAPIMGFTPDCKYPVVYGEKGMAKIRIKSKINYEEDVYLGFIENMSENVLVTYKELNIENSDTILDIKVKYDFSYKL
KDVLDEIKASFPNSIDIEVISNFNPVYFDKESNLVKKLQLAYERVTSLDGTPVTTNGGTYAKVMPNIVPFGPSFPGQKGI
AHNPDEYMDIEDIILNAKIFANAIYELAKE

Sequences:

>Translated_350_residues
MNIISNKIDELKEDLLSDIIDIVKIPSVKGESENGFPFGEKVGEALNKALEISEKLGFKVRNLDNYIGYAEHGDSDDYVC
VIGHVDVVHEGDGWKHQPYKGEETNGRIYGRGVLDNKGPIMSALYGLYAIKELNLKLDKSVRIIFGTNEESGFEDIPYYL
EKEKAPIMGFTPDCKYPVVYGEKGMAKIRIKSKINYEEDVYLGFIENMSENVLVTYKELNIENSDTILDIKVKYDFSYKL
KDVLDEIKASFPNSIDIEVISNFNPVYFDKESNLVKKLQLAYERVTSLDGTPVTTNGGTYAKVMPNIVPFGPSFPGQKGI
AHNPDEYMDIEDIILNAKIFANAIYELAKE
>Mature_350_residues
MNIISNKIDELKEDLLSDIIDIVKIPSVKGESENGFPFGEKVGEALNKALEISEKLGFKVRNLDNYIGYAEHGDSDDYVC
VIGHVDVVHEGDGWKHQPYKGEETNGRIYGRGVLDNKGPIMSALYGLYAIKELNLKLDKSVRIIFGTNEESGFEDIPYYL
EKEKAPIMGFTPDCKYPVVYGEKGMAKIRIKSKINYEEDVYLGFIENMSENVLVTYKELNIENSDTILDIKVKYDFSYKL
KDVLDEIKASFPNSIDIEVISNFNPVYFDKESNLVKKLQLAYERVTSLDGTPVTTNGGTYAKVMPNIVPFGPSFPGQKGI
AHNPDEYMDIEDIILNAKIFANAIYELAKE

Specific function: Unknown

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

Organism=Homo sapiens, GI21071039, Length=88, Percent_Identity=38.6363636363636, Blast_Score=68, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001261
- InterPro:   IPR010964
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF01546 Peptidase_M20 [H]

EC number: 3.5.1.18

Molecular weight: Translated: 39437; Mature: 39437

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIISNKIDELKEDLLSDIIDIVKIPSVKGESENGFPFGEKVGEALNKALEISEKLGFKV
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCEEE
RNLDNYIGYAEHGDSDDYVCVIGHVDVVHEGDGWKHQPYKGEETNGRIYGRGVLDNKGPI
ECHHHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCHH
MSALYGLYAIKELNLKLDKSVRIIFGTNEESGFEDIPYYLEKEKAPIMGFTPDCKYPVVY
HHHHHHHHHHHHCCEEECCCEEEEEECCCCCCCCCCCHHHHCCCCCEECCCCCCCCCEEE
GEKGMAKIRIKSKINYEEDVYLGFIENMSENVLVTYKELNIENSDTILDIKVKYDFSYKL
CCCCCEEEEEEECCCCCCCEEEEECCCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCHH
KDVLDEIKASFPNSIDIEVISNFNPVYFDKESNLVKKLQLAYERVTSLDGTPVTTNGGTY
HHHHHHHHHHCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHCCCCCEEECCCCEE
AKVMPNIVPFGPSFPGQKGIAHNPDEYMDIEDIILNAKIFANAIYELAKE
EEECCCEECCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNIISNKIDELKEDLLSDIIDIVKIPSVKGESENGFPFGEKVGEALNKALEISEKLGFKV
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCEEE
RNLDNYIGYAEHGDSDDYVCVIGHVDVVHEGDGWKHQPYKGEETNGRIYGRGVLDNKGPI
ECHHHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCHH
MSALYGLYAIKELNLKLDKSVRIIFGTNEESGFEDIPYYLEKEKAPIMGFTPDCKYPVVY
HHHHHHHHHHHHCCEEECCCEEEEEECCCCCCCCCCCHHHHCCCCCEECCCCCCCCCEEE
GEKGMAKIRIKSKINYEEDVYLGFIENMSENVLVTYKELNIENSDTILDIKVKYDFSYKL
CCCCCEEEEEEECCCCCCCEEEEECCCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCHH
KDVLDEIKASFPNSIDIEVISNFNPVYFDKESNLVKKLQLAYERVTSLDGTPVTTNGGTY
HHHHHHHHHHCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHCCCCCEEECCCCEE
AKVMPNIVPFGPSFPGQKGIAHNPDEYMDIEDIILNAKIFANAIYELAKE
EEECCCEECCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: N-succinyl-LL-2,6-diaminoheptanedioate; H2O

Specific reaction: N-succinyl-LL-2,6-diaminoheptanedioate + H2O = succinate + LL-2,6-diaminoheptanedioate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]