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The map label for this gene is rhsC [H]

Identifier: 262192865

GI number: 262192865

Start: 409861

End: 410919

Strand: Direct

Name: rhsC [H]

Synonym: BMA10247_A0462

Alternate gene names: 262192865

Gene position: 409861-410919 (Clockwise)

Preceding gene: 126447176

Following gene: 126446222

Centisome position: 17.42

GC content: 61.19

Gene sequence:

>1059_bases
GTGGGCCGAACGGTGGGGCGTGCGAGCGCGATGATCGATCCGGCGGGGCGGACGACGGCTTGGGAATATGACGCGTATGG
CAGTTTGCTTGTGCAGACGTTGCCGGATGGCAGCGCAGTCAGAACGGAATTTGACCTCGATCACCGACCGGTCTGCATGA
CGTTGATAGGCGGCCGGCAGTGGGGCTACGAGTGGAATACGTTCGGTAATCTGCTCGCGCAGAGCGATCCATCGGGGGCG
ATATCTCGCTATACCTATGACGAGTACGGCCAGCTTGTTGAGCATACTGGGCCGCGTGGTGCGAGCACACGGTTCGATTA
TCACCCGGACGGCAATCTCGCGGCGCAGATCGATGCGTTGGGGCATCGCACGCAGTATCGGTACGATGCGCGCGGCTACC
TCGGCGAAGCAATCGATGCGCTCGGACAGCAAAGCCAATACGAGTACGACCGCAACGGCCATCTGACGCGCGCAATCGAG
CCGGGCGGGCGTGAGATTCACTGTGCGTACGACGCCGATGGAAATCTGTCTCGCCATCGTGACCCCATGGGCCACGTGAC
GCAGATGGAGTACTCGGCGCTCGGACAGGTCAGCAGACGGCTCGCGCCCGACGGCACCACCGTTGAATACCGCTACGACA
CGGAAGAACAACTGATCGGCGTCGTGAACGAACGCAGCGAACTATACGCGCTCGAACGCGATGCGCTGGGGCGGATCGTC
GTGGAGACGGACTACTGGGGGCAAGCGCGACGCTATCGGTATGGCGCGGCGGGTGAACTGCTTTGTAGCACTGATCCTCT
GGGGCAGACAGTCGAATACCGATACGATTGGCTGGGGCGCATCGTTCAGAAGCGCGTGCCTCATCCGGAGCAGGATGAGG
CTCTTCAGATCGACAGCTTTGCATACGATCGGCACGGGGACTTGGTGCTCGCGGAGAATCCGTCTTGTCGCGTCGAGTTC
GATTACGATGCAGCGGGCCGCATGATCGAGGAGCGACAGGGTGACGACTTCACGATTGCCAGTGATTATGACGAAGCCGT
GACCTGCCCCCTTCGATAG

Upstream 100 bases:

>100_bases
GAGCCGTTGCAACAGCAACATTCGCGCACCGTGCACATCGTGAAGGGGCGTTACACGATGGCGAGCGTACCGCGCGAACT
GCTCGCGGAATCCGGCGAGC

Downstream 100 bases:

>100_bases
GGCCAATGGGCTTCTAGCAAAGTCCCTTTAAACCAACTCCTGGAAAGCGGCAGGAGCGTCCGCGGTTGCCCGATGTTTCG
CCGCAAACTCTGACGGCGCA

Product: YD repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MGRTVGRASAMIDPAGRTTAWEYDAYGSLLVQTLPDGSAVRTEFDLDHRPVCMTLIGGRQWGYEWNTFGNLLAQSDPSGA
ISRYTYDEYGQLVEHTGPRGASTRFDYHPDGNLAAQIDALGHRTQYRYDARGYLGEAIDALGQQSQYEYDRNGHLTRAIE
PGGREIHCAYDADGNLSRHRDPMGHVTQMEYSALGQVSRRLAPDGTTVEYRYDTEEQLIGVVNERSELYALERDALGRIV
VETDYWGQARRYRYGAAGELLCSTDPLGQTVEYRYDWLGRIVQKRVPHPEQDEALQIDSFAYDRHGDLVLAENPSCRVEF
DYDAAGRMIEERQGDDFTIASDYDEAVTCPLR

Sequences:

>Translated_352_residues
MGRTVGRASAMIDPAGRTTAWEYDAYGSLLVQTLPDGSAVRTEFDLDHRPVCMTLIGGRQWGYEWNTFGNLLAQSDPSGA
ISRYTYDEYGQLVEHTGPRGASTRFDYHPDGNLAAQIDALGHRTQYRYDARGYLGEAIDALGQQSQYEYDRNGHLTRAIE
PGGREIHCAYDADGNLSRHRDPMGHVTQMEYSALGQVSRRLAPDGTTVEYRYDTEEQLIGVVNERSELYALERDALGRIV
VETDYWGQARRYRYGAAGELLCSTDPLGQTVEYRYDWLGRIVQKRVPHPEQDEALQIDSFAYDRHGDLVLAENPSCRVEF
DYDAAGRMIEERQGDDFTIASDYDEAVTCPLR
>Mature_351_residues
GRTVGRASAMIDPAGRTTAWEYDAYGSLLVQTLPDGSAVRTEFDLDHRPVCMTLIGGRQWGYEWNTFGNLLAQSDPSGAI
SRYTYDEYGQLVEHTGPRGASTRFDYHPDGNLAAQIDALGHRTQYRYDARGYLGEAIDALGQQSQYEYDRNGHLTRAIEP
GGREIHCAYDADGNLSRHRDPMGHVTQMEYSALGQVSRRLAPDGTTVEYRYDTEEQLIGVVNERSELYALERDALGRIVV
ETDYWGQARRYRYGAAGELLCSTDPLGQTVEYRYDWLGRIVQKRVPHPEQDEALQIDSFAYDRHGDLVLAENPSCRVEFD
YDAAGRMIEERQGDDFTIASDYDEAVTCPLR

Specific function: Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell [H]

COG id: COG3209

COG function: function code M; Rhs family protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RHS family [H]

Homologues:

Organism=Escherichia coli, GI1786917, Length=348, Percent_Identity=29.3103448275862, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1790020, Length=356, Percent_Identity=28.3707865168539, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI48994942, Length=356, Percent_Identity=28.3707865168539, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1786706, Length=334, Percent_Identity=29.6407185628743, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001826
- InterPro:   IPR022385
- InterPro:   IPR006530 [H]

Pfam domain/function: PF03527 RHS; PF05593 RHS_repeat [H]

EC number: NA

Molecular weight: Translated: 39741; Mature: 39610

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRTVGRASAMIDPAGRTTAWEYDAYGSLLVQTLPDGSAVRTEFDLDHRPVCMTLIGGRQ
CCCCCCCHHEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCC
WGYEWNTFGNLLAQSDPSGAISRYTYDEYGQLVEHTGPRGASTRFDYHPDGNLAAQIDAL
CCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEHHH
GHRTQYRYDARGYLGEAIDALGQQSQYEYDRNGHLTRAIEPGGREIHCAYDADGNLSRHR
CCCCCEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCHHCC
DPMGHVTQMEYSALGQVSRRLAPDGTTVEYRYDTEEQLIGVVNERSELYALERDALGRIV
CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCHHHEEECCCCCCEEE
VETDYWGQARRYRYGAAGELLCSTDPLGQTVEYRYDWLGRIVQKRVPHPEQDEALQIDSF
EEECCCCCHHHEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
AYDRHGDLVLAENPSCRVEFDYDAAGRMIEERQGDDFTIASDYDEAVTCPLR
EECCCCCEEEECCCCEEEEECCCHHHHHHHHCCCCCEEEECCCCCCEECCCC
>Mature Secondary Structure 
GRTVGRASAMIDPAGRTTAWEYDAYGSLLVQTLPDGSAVRTEFDLDHRPVCMTLIGGRQ
CCCCCCHHEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCC
WGYEWNTFGNLLAQSDPSGAISRYTYDEYGQLVEHTGPRGASTRFDYHPDGNLAAQIDAL
CCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEHHH
GHRTQYRYDARGYLGEAIDALGQQSQYEYDRNGHLTRAIEPGGREIHCAYDADGNLSRHR
CCCCCEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCHHCC
DPMGHVTQMEYSALGQVSRRLAPDGTTVEYRYDTEEQLIGVVNERSELYALERDALGRIV
CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCHHHEEECCCCCCEEE
VETDYWGQARRYRYGAAGELLCSTDPLGQTVEYRYDWLGRIVQKRVPHPEQDEALQIDSF
EEECCCCCHHHEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
AYDRHGDLVLAENPSCRVEFDYDAAGRMIEERQGDDFTIASDYDEAVTCPLR
EECCCCCEEEECCCCEEEEECCCHHHHHHHHCCCCCEEEECCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8387990; 8905232; 9278503; 2644231; 2403547; 7934896 [H]