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The map label for this gene is intZ [H]

Identifier: 126455326

GI number: 126455326

Start: 108379

End: 109608

Strand: Direct

Name: intZ [H]

Synonym: BURPS1106A_0112

Alternate gene names: 126455326

Gene position: 108379-109608 (Clockwise)

Preceding gene: 126454342

Following gene: 126455245

Centisome position: 2.72

GC content: 59.76

Gene sequence:

>1230_bases
ATGCCTAAGATCTCGACTCCCCTGAACGACACGCGTATCAAGGCTCTCAAGCCGAAGGCCGCCCGCTACACCGTGTCGGA
CGGCGGTGGGCTGGTACTTGAGGTGATGACTTCCGGCTCGAAGTTCTGGCGCTACCGGTATTCGCTCCACGGAAAGCAGC
AGCCGGTTGTCACGATCGGCGAATATCCGGCCGTGAGTTTGACTGCCGCGCGGGAGCGGGCGCGACGTTATGCGGAGATT
GTGGCTGGTGGCGTGTCCCCAGTCGCAGATGCTCGAAAGGATCGCGGCGCGGTGAAGAGTCTCGATACCATCCATGAGTT
CGCCGAGTACTGGATCGAGCAGCAGATGATGGGAAAGTCCGCCGAGTATTTGCGGACGACGAGACGGGCGCTTGAGAAAG
ATATCTATCCGGCCATCGGCGGCAAGTCCGTTTCGGACGTAACGCCCGGCGATGTGCTCGCGATCTGTGATCGAATCAAG
AAGCGTGGGGCGCCGAAAATGGCCCTGTCTACGCGAAACATCCTCAAGCGCATTTACGAGTACGCGATCGCACGTCAGCT
CGTTATGAGCAATCCGGCGCAGGCCATTGTCGCGCGCTTCGTTGCCACGCAGGCCAGTCGCGATCGTGTACTGTCGCCGA
ATGAAATAGGGCGCGTGTTGCGTGCCGTCTATGCGTCCAGCATTCGGCGGCCGCTCAAACTCGCGATTCATCTGCTTGTG
CTGACAATGGTTCGCAAGTCGGAGCTGATCGAAGCGCGTTGGGACGAATTCGACCTCGACGCAAGCATTTGGCGCATCCC
TGCCGAGCGGATGAAAAAGGACCGGGAGCATTGGGTCTATCTCGCTCCACAGGCTGTTGCGATGCTGCGCGAACTGCACG
CCACTCGGACCAGTCACCAGTACGTGTTCCCGTCGTCGCGCGGTGCTGACCGGCCGATTGCGAAAAGCACGCTGAATCAG
GCCGTCAGGGCGCTCGATATGGACGTCCAGCACTTCGTTTTGCACGACTTCCGTCGTACCGCATCGACGCATCTTCACGA
GATGGGCCAGCCGTCCGACGCGATCGAGAAGGCGCTCGCGCATTCGATCAAGGGTATCAAGGGCGTGTACAACCGTGCTG
AGTACGCCGACGAGCGTCGCCGAATCACGGCGTTATGGGCCGATTTCGTCGACGCTCAAATCGACGAAGGTCGCAAGGTA
GTTATTGGAAAGTTCGGCTCTGCTGCCTGA

Upstream 100 bases:

>100_bases
GGCAAAAGGTTGCCAACCTTCCATAATTGACAGCTACGCTTTGTTAGTACACATTTCAGTACACAAATCGATTGTGTACT
TTTGAGTGTGTACTAACGCC

Downstream 100 bases:

>100_bases
GCTTACGGGTAGGCCCACTGCGTACCGTTTGCGTTGTACCCGCATGGCATGACCCCCTTGCCGCACACCTCCCACCAGCA
AAGCGGACTGGGCCTGCCAT

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 408

Protein sequence:

>409_residues
MPKISTPLNDTRIKALKPKAARYTVSDGGGLVLEVMTSGSKFWRYRYSLHGKQQPVVTIGEYPAVSLTAARERARRYAEI
VAGGVSPVADARKDRGAVKSLDTIHEFAEYWIEQQMMGKSAEYLRTTRRALEKDIYPAIGGKSVSDVTPGDVLAICDRIK
KRGAPKMALSTRNILKRIYEYAIARQLVMSNPAQAIVARFVATQASRDRVLSPNEIGRVLRAVYASSIRRPLKLAIHLLV
LTMVRKSELIEARWDEFDLDASIWRIPAERMKKDREHWVYLAPQAVAMLRELHATRTSHQYVFPSSRGADRPIAKSTLNQ
AVRALDMDVQHFVLHDFRRTASTHLHEMGQPSDAIEKALAHSIKGIKGVYNRAEYADERRRITALWADFVDAQIDEGRKV
VIGKFGSAA

Sequences:

>Translated_409_residues
MPKISTPLNDTRIKALKPKAARYTVSDGGGLVLEVMTSGSKFWRYRYSLHGKQQPVVTIGEYPAVSLTAARERARRYAEI
VAGGVSPVADARKDRGAVKSLDTIHEFAEYWIEQQMMGKSAEYLRTTRRALEKDIYPAIGGKSVSDVTPGDVLAICDRIK
KRGAPKMALSTRNILKRIYEYAIARQLVMSNPAQAIVARFVATQASRDRVLSPNEIGRVLRAVYASSIRRPLKLAIHLLV
LTMVRKSELIEARWDEFDLDASIWRIPAERMKKDREHWVYLAPQAVAMLRELHATRTSHQYVFPSSRGADRPIAKSTLNQ
AVRALDMDVQHFVLHDFRRTASTHLHEMGQPSDAIEKALAHSIKGIKGVYNRAEYADERRRITALWADFVDAQIDEGRKV
VIGKFGSAA
>Mature_408_residues
PKISTPLNDTRIKALKPKAARYTVSDGGGLVLEVMTSGSKFWRYRYSLHGKQQPVVTIGEYPAVSLTAARERARRYAEIV
AGGVSPVADARKDRGAVKSLDTIHEFAEYWIEQQMMGKSAEYLRTTRRALEKDIYPAIGGKSVSDVTPGDVLAICDRIKK
RGAPKMALSTRNILKRIYEYAIARQLVMSNPAQAIVARFVATQASRDRVLSPNEIGRVLRAVYASSIRRPLKLAIHLLVL
TMVRKSELIEARWDEFDLDASIWRIPAERMKKDREHWVYLAPQAVAMLRELHATRTSHQYVFPSSRGADRPIAKSTLNQA
VRALDMDVQHFVLHDFRRTASTHLHEMGQPSDAIEKALAHSIKGIKGVYNRAEYADERRRITALWADFVDAQIDEGRKVV
IGKFGSAA

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=394, Percent_Identity=36.0406091370558, Blast_Score=209, Evalue=3e-55,
Organism=Escherichia coli, GI1788974, Length=408, Percent_Identity=33.578431372549, Blast_Score=209, Evalue=4e-55,
Organism=Escherichia coli, GI1788690, Length=390, Percent_Identity=29.7435897435897, Blast_Score=168, Evalue=6e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46005; Mature: 45873

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKISTPLNDTRIKALKPKAARYTVSDGGGLVLEVMTSGSKFWRYRYSLHGKQQPVVTIG
CCCCCCCCCCCHHHEECCCCCEEEECCCCCEEEEEECCCCHHEEEEEEECCCCCCEEEEC
EYPAVSLTAARERARRYAEIVAGGVSPVADARKDRGAVKSLDTIHEFAEYWIEQQMMGKS
CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
AEYLRTTRRALEKDIYPAIGGKSVSDVTPGDVLAICDRIKKRGAPKMALSTRNILKRIYE
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
YAIARQLVMSNPAQAIVARFVATQASRDRVLSPNEIGRVLRAVYASSIRRPLKLAIHLLV
HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTMVRKSELIEARWDEFDLDASIWRIPAERMKKDREHWVYLAPQAVAMLRELHATRTSHQ
HHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHCCCCCCEEEECHHHHHHHHHHHHHHCCCC
YVFPSSRGADRPIAKSTLNQAVRALDMDVQHFVLHDFRRTASTHLHEMGQPSDAIEKALA
EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
HSIKGIKGVYNRAEYADERRRITALWADFVDAQIDEGRKVVIGKFGSAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
>Mature Secondary Structure 
PKISTPLNDTRIKALKPKAARYTVSDGGGLVLEVMTSGSKFWRYRYSLHGKQQPVVTIG
CCCCCCCCCCHHHEECCCCCEEEECCCCCEEEEEECCCCHHEEEEEEECCCCCCEEEEC
EYPAVSLTAARERARRYAEIVAGGVSPVADARKDRGAVKSLDTIHEFAEYWIEQQMMGKS
CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
AEYLRTTRRALEKDIYPAIGGKSVSDVTPGDVLAICDRIKKRGAPKMALSTRNILKRIYE
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
YAIARQLVMSNPAQAIVARFVATQASRDRVLSPNEIGRVLRAVYASSIRRPLKLAIHLLV
HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTMVRKSELIEARWDEFDLDASIWRIPAERMKKDREHWVYLAPQAVAMLRELHATRTSHQ
HHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHCCCCCCEEEECHHHHHHHHHHHHHHCCCC
YVFPSSRGADRPIAKSTLNQAVRALDMDVQHFVLHDFRRTASTHLHEMGQPSDAIEKALA
EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
HSIKGIKGVYNRAEYADERRRITALWADFVDAQIDEGRKVVIGKFGSAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]