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The map label for this gene is rodZ [H]

Identifier: 126454923

GI number: 126454923

Start: 2218188

End: 2219198

Strand: Reverse

Name: rodZ [H]

Synonym: BURPS1106A_2229

Alternate gene names: 126454923

Gene position: 2219198-2218188 (Counterclockwise)

Preceding gene: 126453816

Following gene: 126452211

Centisome position: 55.64

GC content: 74.78

Gene sequence:

>1011_bases
ATGGCGTCGGTCGCGGCGGTGGGCGCGCGGCTCGCGGAGTTGCGGCGGACGAAGGGGTGGTCGGTCGACGACGTCTCCGC
GCGGCTGAAGGTCGCGGCGCCGAAGCTTCAGGCGCTCGAGGCGGGCGATACGAGCCAGTTGCCGGGCACGACGTTTGCGC
TCGGCCTCGTGCGCAGTTACGCAAAGATGCTCGGCGTCGATCCGGAGCCGTTCGCGCAGGCGCTGCGCCGCGAAAAAGGC
GTGCCGGAGGTCGATCTGTCGATGCCCGCGTCGGCCGGCACCGATCTGCCGCGCGGCAGGGTGTCGATTCCGCTGGGGGG
GGCGTCGCGCGGCCGGCCATGGCTGTGGGCGGTCGCGGCGGTCGTGGTCGCGCTCGTTGCCGCGGCGATGTGGCGTACGG
GCGGCGATTCGTCGAACTGGCTCGCGCGCTTCAAGTCGAGCGGCGCGGGCGAAGCCGCGTCGGCCGCGCACGCGCAGCAG
GAAGGCGCCGCGTCGGATCTGCCGGCGAGCGCGGCGGTGTCGGGCACGGTCATGCAGGCGGGGGCGCTCGCGGCGTCCGC
GACGCAGTCGGTCGGCGGCGCGTCGGCGGGCGACACGGCCGCGGCGAGCGTGCCGGCCGCGGGGGCCGCGCCCGTCGTCG
CGAGCGCGGCGGCTGCGTTATCCGCGTCGGCGCCGGTCGCCGCCGCGCAGCCAGCGCAAGGCGCGCAGCAGCCGGCCGCG
TCGGCGGCCGACGGCGCGAGCGCAGCCGTCACGGCGGCGCCCGGCCAGTCGGTCGTCGCGCTCAAGGTCGCGCAGGACTG
CTGGTTCAGCGTGCGCGACAAGAACGGCAAGGAGCTGTTCTCGGCGCTCGTGCGCGCCGGCGAGACGAGGCAGGTCGCGG
GCGACGCGCCGCTCAAGGTCACGATCGGCAACAAGGCCGGGCTCGAATCGGTCGCTTTCGACGGCAAGCCCGTCGATCCG
GCAAAATACTCGACGGCTCGGGGCAATGTCGCGCGTTTCGCATTGCCCTGA

Upstream 100 bases:

>100_bases
GGCAAGAAGAATCGACGCGAGGATGAGGATGAGCGAACCGCAGCCGTCAAAGAGCCCAGAGACGAACGCAGGCGAGAAAC
CGGCGACAGCCGGTGGAGGC

Downstream 100 bases:

>100_bases
CGGCAAGCGCCGTGGCCGGGCCAGGCACGGCGCTTTTCCCTTTTGCGCCGCCGGGCAGGCGGCGCGCTTGGCGTAACTTG
GATCTATCGATGCAATCCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MASVAAVGARLAELRRTKGWSVDDVSARLKVAAPKLQALEAGDTSQLPGTTFALGLVRSYAKMLGVDPEPFAQALRREKG
VPEVDLSMPASAGTDLPRGRVSIPLGGASRGRPWLWAVAAVVVALVAAAMWRTGGDSSNWLARFKSSGAGEAASAAHAQQ
EGAASDLPASAAVSGTVMQAGALAASATQSVGGASAGDTAAASVPAAGAAPVVASAAAALSASAPVAAAQPAQGAQQPAA
SAADGASAAVTAAPGQSVVALKVAQDCWFSVRDKNGKELFSALVRAGETRQVAGDAPLKVTIGNKAGLESVAFDGKPVDP
AKYSTARGNVARFALP

Sequences:

>Translated_336_residues
MASVAAVGARLAELRRTKGWSVDDVSARLKVAAPKLQALEAGDTSQLPGTTFALGLVRSYAKMLGVDPEPFAQALRREKG
VPEVDLSMPASAGTDLPRGRVSIPLGGASRGRPWLWAVAAVVVALVAAAMWRTGGDSSNWLARFKSSGAGEAASAAHAQQ
EGAASDLPASAAVSGTVMQAGALAASATQSVGGASAGDTAAASVPAAGAAPVVASAAAALSASAPVAAAQPAQGAQQPAA
SAADGASAAVTAAPGQSVVALKVAQDCWFSVRDKNGKELFSALVRAGETRQVAGDAPLKVTIGNKAGLESVAFDGKPVDP
AKYSTARGNVARFALP
>Mature_335_residues
ASVAAVGARLAELRRTKGWSVDDVSARLKVAAPKLQALEAGDTSQLPGTTFALGLVRSYAKMLGVDPEPFAQALRREKGV
PEVDLSMPASAGTDLPRGRVSIPLGGASRGRPWLWAVAAVVVALVAAAMWRTGGDSSNWLARFKSSGAGEAASAAHAQQE
GAASDLPASAAVSGTVMQAGALAASATQSVGGASAGDTAAASVPAAGAAPVVASAAAALSASAPVAAAQPAQGAQQPAAS
AADGASAAVTAAPGQSVVALKVAQDCWFSVRDKNGKELFSALVRAGETRQVAGDAPLKVTIGNKAGLESVAFDGKPVDPA
KYSTARGNVARFALP

Specific function: Cytoskeletal protein that is involved in cell-shape control through regulation of the length of the long axis [H]

COG id: COG1426

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein. Note=Forms helical filaments along the long axis of the cell (By similarity) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788864, Length=342, Percent_Identity=26.6081871345029, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 33199; Mature: 33067

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASVAAVGARLAELRRTKGWSVDDVSARLKVAAPKLQALEAGDTSQLPGTTFALGLVRSY
CCCHHHHHHHHHHHHHHCCCCCCHHHHHEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHH
AKMLGVDPEPFAQALRREKGVPEVDLSMPASAGTDLPRGRVSIPLGGASRGRPWLWAVAA
HHHHCCCCHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHH
VVVALVAAAMWRTGGDSSNWLARFKSSGAGEAASAAHAQQEGAASDLPASAAVSGTVMQA
HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
GALAASATQSVGGASAGDTAAASVPAAGAAPVVASAAAALSASAPVAAAQPAQGAQQPAA
HHHHHHHHHHCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
SAADGASAAVTAAPGQSVVALKVAQDCWFSVRDKNGKELFSALVRAGETRQVAGDAPLKV
CCCCCCCEEEEECCCCCEEEEEEHHHHHHCCCCCCHHHHHHHHHHCCCCCEECCCCCEEE
TIGNKAGLESVAFDGKPVDPAKYSTARGNVARFALP
EECCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCC
>Mature Secondary Structure 
ASVAAVGARLAELRRTKGWSVDDVSARLKVAAPKLQALEAGDTSQLPGTTFALGLVRSY
CCHHHHHHHHHHHHHHCCCCCCHHHHHEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHH
AKMLGVDPEPFAQALRREKGVPEVDLSMPASAGTDLPRGRVSIPLGGASRGRPWLWAVAA
HHHHCCCCHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHH
VVVALVAAAMWRTGGDSSNWLARFKSSGAGEAASAAHAQQEGAASDLPASAAVSGTVMQA
HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
GALAASATQSVGGASAGDTAAASVPAAGAAPVVASAAAALSASAPVAAAQPAQGAQQPAA
HHHHHHHHHHCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
SAADGASAAVTAAPGQSVVALKVAQDCWFSVRDKNGKELFSALVRAGETRQVAGDAPLKV
CCCCCCCEEEEECCCCCEEEEEEHHHHHHCCCCCCHHHHHHHHHHCCCCCEECCCCCEEE
TIGNKAGLESVAFDGKPVDPAKYSTARGNVARFALP
EECCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA