Click here to switch to the map view.

The map label for this gene is rfaB [C]

Identifier: 126454176

GI number: 126454176

Start: 1194258

End: 1195520

Strand: Direct

Name: rfaB [C]

Synonym: BURPS1106A_1211

Alternate gene names: 126454176

Gene position: 1194258-1195520 (Clockwise)

Preceding gene: 126455061

Following gene: 126452914

Centisome position: 29.94

GC content: 70.31

Gene sequence:

>1263_bases
ATGACGCCGCCCGTCGCTCCGCCCGCTTTCACCGCGCAGCCCGCCGAGACGGCGGCGGACGTTGCCCGCCCGGGCGTGCG
GCGCGTGCGCATCCTTTTTCACATCAACGACTTCGGCCGGGGCGGCACGGAGACTGCGCTGCTCGCATGGCTCAACGCGC
TTGATCGAAGCGCGTTCGAAGTCGGGCTGTCGGTCACGTATCCGACGGCGGATCTGACGATGTGGCGCGCGAAGGCGATT
CCGGCCGATGTCGCGCTGCAGGTGCTGGCTTCCGAGCGGTGGATGCACGCGCTCCACCAGCGCGAGCGCGTACGCAGGCT
GCGCGGCGGCGAGAAGCTGTTGCATAAGGCATCGACGCATGCGCTGATCCGGCCGGCCGTCGCGCGCCGTTTTCTGCGGC
TCGCGCGCGGCTACGACGTGGTTTGCGATTTCGATTTCTCGCTGCGACGCATTGCCGGGCGTGGTGGCATGCCGTGGATC
GGCGTGAGCCACTACAGTTTCGCCGCGCGCTTCGGCGAGAAAAGCGCGTCGTACATGGCGCGGCGCGTTCGCCAATACGA
GCGCTACACGGCGCTCGCGGTGCTCACGCCCGACATGCGGCGCGAGGCCGAGTCGCTCTTCGCCGATACCCGTGTCGTCG
TCACCGCGCTGCCGAACGTGATCGATCCGCAGGCGCTGCGCGCGCGGGCGGACGAGCCCGCCGAACTGCCGGCCGGGCGT
TTCATCGTGTCGGTCGCGCGGCTCGATGAAGGGCAGAAGGATCATCGGACCTTGCTGCGCGCGTATGCGCAAGTGCGTGC
AAGCCGCGCCGACGCGCCGCGCCTCGTGCTGTTGGGCGACGGCCCGGATCGCGGCGCGCTCGAGCAACTCGCGGCGGAGC
TGGGGCTGCGCGACGCGGTGCTGTTCGCGGGCTTTTGCGCGAATCCGTTTCCGTACGTGCGTGCGGCCGACATGCTGATC
CTGAGCAGCCGCTACGAGGGCTTCGGCATGGTGATCGGCGAGGCGATGGCGCTCGGTACGCCGGTTATTTCAGCGGATTG
CCCCACTGGCCCGCGCGATCTGTTGGACTTCGGCCGAGCGGGGCTGCTCGTGCCGCCCGGCGCGGCCGACGCGCTCGCGG
ACGCGATCGAGCGGATGCTCGCCGACGGCGAGTTGCGCGCGTCGCTCGTGGCGCACGCAACGCGCAAGATCGAGTCGTTC
GGCCCGCGCGCGGCGAACGCGCGCATGCAGGCGCTCGCCGCGCAACTGCTCGATCGGGCGTGA

Upstream 100 bases:

>100_bases
AAACGACGATGCTCGCGTTCTGGTCGTTTGCGGGTTTCCTGCTCGGCTGCGGCGAACGCGACGCCTGCATGGCGCGCGTA
TCGCAGAACGCGGACGCACG

Downstream 100 bases:

>100_bases
GCTTGCTCGCTTCGCACGGGCGCGCGGCGCGAATTCGCTAAAATGTCCGGTCGCCCGTTCTTCATGCCTTCACCGTGACC
GCTCCGTTGACGCTTTCCAG

Product: glycosyl transferase, group 1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MTPPVAPPAFTAQPAETAADVARPGVRRVRILFHINDFGRGGTETALLAWLNALDRSAFEVGLSVTYPTADLTMWRAKAI
PADVALQVLASERWMHALHQRERVRRLRGGEKLLHKASTHALIRPAVARRFLRLARGYDVVCDFDFSLRRIAGRGGMPWI
GVSHYSFAARFGEKSASYMARRVRQYERYTALAVLTPDMRREAESLFADTRVVVTALPNVIDPQALRARADEPAELPAGR
FIVSVARLDEGQKDHRTLLRAYAQVRASRADAPRLVLLGDGPDRGALEQLAAELGLRDAVLFAGFCANPFPYVRAADMLI
LSSRYEGFGMVIGEAMALGTPVISADCPTGPRDLLDFGRAGLLVPPGAADALADAIERMLADGELRASLVAHATRKIESF
GPRAANARMQALAAQLLDRA

Sequences:

>Translated_420_residues
MTPPVAPPAFTAQPAETAADVARPGVRRVRILFHINDFGRGGTETALLAWLNALDRSAFEVGLSVTYPTADLTMWRAKAI
PADVALQVLASERWMHALHQRERVRRLRGGEKLLHKASTHALIRPAVARRFLRLARGYDVVCDFDFSLRRIAGRGGMPWI
GVSHYSFAARFGEKSASYMARRVRQYERYTALAVLTPDMRREAESLFADTRVVVTALPNVIDPQALRARADEPAELPAGR
FIVSVARLDEGQKDHRTLLRAYAQVRASRADAPRLVLLGDGPDRGALEQLAAELGLRDAVLFAGFCANPFPYVRAADMLI
LSSRYEGFGMVIGEAMALGTPVISADCPTGPRDLLDFGRAGLLVPPGAADALADAIERMLADGELRASLVAHATRKIESF
GPRAANARMQALAAQLLDRA
>Mature_419_residues
TPPVAPPAFTAQPAETAADVARPGVRRVRILFHINDFGRGGTETALLAWLNALDRSAFEVGLSVTYPTADLTMWRAKAIP
ADVALQVLASERWMHALHQRERVRRLRGGEKLLHKASTHALIRPAVARRFLRLARGYDVVCDFDFSLRRIAGRGGMPWIG
VSHYSFAARFGEKSASYMARRVRQYERYTALAVLTPDMRREAESLFADTRVVVTALPNVIDPQALRARADEPAELPAGRF
IVSVARLDEGQKDHRTLLRAYAQVRASRADAPRLVLLGDGPDRGALEQLAAELGLRDAVLFAGFCANPFPYVRAADMLIL
SSRYEGFGMVIGEAMALGTPVISADCPTGPRDLLDFGRAGLLVPPGAADALADAIERMLADGELRASLVAHATRKIESFG
PRAANARMQALAAQLLDRA

Specific function: Adds A Galactose Goup To A Glucose Group Of Lps. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

Organism=Escherichia coli, GI226510984, Length=159, Percent_Identity=32.0754716981132, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: 2.4.1.- [C]

Molecular weight: Translated: 45822; Mature: 45691

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPPVAPPAFTAQPAETAADVARPGVRRVRILFHINDFGRGGTETALLAWLNALDRSAFE
CCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
VGLSVTYPTADLTMWRAKAIPADVALQVLASERWMHALHQRERVRRLRGGEKLLHKASTH
CCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
ALIRPAVARRFLRLARGYDVVCDFDFSLRRIAGRGGMPWIGVSHYSFAARFGEKSASYMA
HHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCEECCHHHHHHHHCCHHHHHHH
RRVRQYERYTALAVLTPDMRREAESLFADTRVVVTALPNVIDPQALRARADEPAELPAGR
HHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCH
FIVSVARLDEGQKDHRTLLRAYAQVRASRADAPRLVLLGDGPDRGALEQLAAELGLRDAV
HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCHHHH
LFAGFCANPFPYVRAADMLILSSRYEGFGMVIGEAMALGTPVISADCPTGPRDLLDFGRA
HHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEECCCCCCHHHHHHHCCC
GLLVPPGAADALADAIERMLADGELRASLVAHATRKIESFGPRAANARMQALAAQLLDRA
CCEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TPPVAPPAFTAQPAETAADVARPGVRRVRILFHINDFGRGGTETALLAWLNALDRSAFE
CCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
VGLSVTYPTADLTMWRAKAIPADVALQVLASERWMHALHQRERVRRLRGGEKLLHKASTH
CCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
ALIRPAVARRFLRLARGYDVVCDFDFSLRRIAGRGGMPWIGVSHYSFAARFGEKSASYMA
HHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCEECCHHHHHHHHCCHHHHHHH
RRVRQYERYTALAVLTPDMRREAESLFADTRVVVTALPNVIDPQALRARADEPAELPAGR
HHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCH
FIVSVARLDEGQKDHRTLLRAYAQVRASRADAPRLVLLGDGPDRGALEQLAAELGLRDAV
HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCHHHH
LFAGFCANPFPYVRAADMLILSSRYEGFGMVIGEAMALGTPVISADCPTGPRDLLDFGRA
HHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEECCCCCCHHHHHHHCCC
GLLVPPGAADALADAIERMLADGELRASLVAHATRKIESFGPRAANARMQALAAQLLDRA
CCEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Hexosyltransferases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]