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The map label for this gene is rfaQ [H]

Identifier: 126452914

GI number: 126452914

Start: 1195607

End: 1196779

Strand: Direct

Name: rfaQ [H]

Synonym: BURPS1106A_1212

Alternate gene names: 126452914

Gene position: 1195607-1196779 (Clockwise)

Preceding gene: 126454176

Following gene: 126453775

Centisome position: 29.98

GC content: 68.88

Gene sequence:

>1173_bases
TTGACGCTTTCCAGGCCGCCGCGCACCATTCTCGTATCCTGCACGCGTCGCCTTGGCGACGTGCTGCTGACGACGCCGCT
CGTCCGGTCACTGAAGGCGCGCTGGCCCGACGCGCAGATCGACATGATCGTGTTTCGCGGCACTGAAGGCGTGCTCGAGC
ACAATCCCGACATCCGCCGCGTGATCACGGTCGCGCCGCGCGCTCGGCCGAAGGAGCGCATCGCCGATGCGCTGCGCATC
TGGCGCAAGTACGATCTCGCGTGTGCGGCGATCAGTTCCGATCGCGCGCGCTTCTATGCGTTCTTTGCGGGGCGCAGGCG
GATCGGGCTCGTCGATCCCGGGCGGCTCACGCGGCTCACGCGTTTCATCCTGAACGGCATCGTGCTCGACGAGCATCGCG
ATGTCCATACCGTCACGAGCAACCTGTCGCTGGCCGACGCGCTCGATGTACCGCGATGCGCCGACGTCGTCGCGCCCGGC
ATCGGCGACGATCCCGCCGCCCGCGCTCGCTTCGACGCGAAGCTGTATGGAACGCCCGCGCTGTCACGCGGCGAGCCGTA
CATCGTGCTGCATCCGTATCCGATGTTCCGCTACAAGCAGTGGCATGAGGACGGCTGGGTCGATCTCGTGCGCTGGGCAC
GCAGCAGCGGGTTCGCGGTCGCGCTGAGCGGCGGTCCCGCGCAGGCCGAGCGCGACTATGCCGCGCGTATCGCGCGAGCG
GCCGGCGAACCCGTGTTGAACATGACGGGGGAACTGTCGTTCGGCGAGAGCGCCGAGATGTTTCGGCACGCGCGGCTCTT
CATCGGTCCGGACACCGGCGCGACGCATGTTGCCGCCGCCTGCGGCGTTCCGACGATCGCGCTCTTCGGGCCGTCGAATC
CGACGCGCTGGGGCCCGTGGCCCGCGCATTGGCCGGCCGGCGACGAGCCGTGGCCCCTGCGCGGTTCGGGACGGCGCGGC
AATGTCTATTTGCTGCAGGGCGAAGGCGATTGCGTGCCGTGCAAGCTCGAAGGCTGCGATCGGCATCTGGACAGTTGGAG
CCGATGCCTGAGCGAACTGCCGTCGGCGCGTGTGATCGGCGTGGCTGCGGCGATGCTCGGATTCGATGCGGCTAACGCGC
CGGCTGACGTCGCGACGCCGGTCGATGTCAGCCGGCTCGCGGCGCGCAAGTAG

Upstream 100 bases:

>100_bases
TCGATCGGGCGTGAGCTTGCTCGCTTCGCACGGGCGCGCGGCGCGAATTCGCTAAAATGTCCGGTCGCCCGTTCTTCATG
CCTTCACCGTGACCGCTCCG

Downstream 100 bases:

>100_bases
GGCGGGCCGCTTCCCGGATCGGGCCGGCATCGCGGCTCGCAGCGGATTCGGCGATGGGGTGCGTTCGGCTGCGCGTGGGC
GAGCGATCGGTATGGTGCGG

Product: putative lipopolysaccharide heptosyltransferase III

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MTLSRPPRTILVSCTRRLGDVLLTTPLVRSLKARWPDAQIDMIVFRGTEGVLEHNPDIRRVITVAPRARPKERIADALRI
WRKYDLACAAISSDRARFYAFFAGRRRIGLVDPGRLTRLTRFILNGIVLDEHRDVHTVTSNLSLADALDVPRCADVVAPG
IGDDPAARARFDAKLYGTPALSRGEPYIVLHPYPMFRYKQWHEDGWVDLVRWARSSGFAVALSGGPAQAERDYAARIARA
AGEPVLNMTGELSFGESAEMFRHARLFIGPDTGATHVAAACGVPTIALFGPSNPTRWGPWPAHWPAGDEPWPLRGSGRRG
NVYLLQGEGDCVPCKLEGCDRHLDSWSRCLSELPSARVIGVAAAMLGFDAANAPADVATPVDVSRLAARK

Sequences:

>Translated_390_residues
MTLSRPPRTILVSCTRRLGDVLLTTPLVRSLKARWPDAQIDMIVFRGTEGVLEHNPDIRRVITVAPRARPKERIADALRI
WRKYDLACAAISSDRARFYAFFAGRRRIGLVDPGRLTRLTRFILNGIVLDEHRDVHTVTSNLSLADALDVPRCADVVAPG
IGDDPAARARFDAKLYGTPALSRGEPYIVLHPYPMFRYKQWHEDGWVDLVRWARSSGFAVALSGGPAQAERDYAARIARA
AGEPVLNMTGELSFGESAEMFRHARLFIGPDTGATHVAAACGVPTIALFGPSNPTRWGPWPAHWPAGDEPWPLRGSGRRG
NVYLLQGEGDCVPCKLEGCDRHLDSWSRCLSELPSARVIGVAAAMLGFDAANAPADVATPVDVSRLAARK
>Mature_389_residues
TLSRPPRTILVSCTRRLGDVLLTTPLVRSLKARWPDAQIDMIVFRGTEGVLEHNPDIRRVITVAPRARPKERIADALRIW
RKYDLACAAISSDRARFYAFFAGRRRIGLVDPGRLTRLTRFILNGIVLDEHRDVHTVTSNLSLADALDVPRCADVVAPGI
GDDPAARARFDAKLYGTPALSRGEPYIVLHPYPMFRYKQWHEDGWVDLVRWARSSGFAVALSGGPAQAERDYAARIARAA
GEPVLNMTGELSFGESAEMFRHARLFIGPDTGATHVAAACGVPTIALFGPSNPTRWGPWPAHWPAGDEPWPLRGSGRRGN
VYLLQGEGDCVPCKLEGCDRHLDSWSRCLSELPSARVIGVAAAMLGFDAANAPADVATPVDVSRLAARK

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=334, Percent_Identity=26.3473053892216, Blast_Score=114, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 42769; Mature: 42638

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSRPPRTILVSCTRRLGDVLLTTPLVRSLKARWPDAQIDMIVFRGTEGVLEHNPDIRR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHCCCCCEE
VITVAPRARPKERIADALRIWRKYDLACAAISSDRARFYAFFAGRRRIGLVDPGRLTRLT
EEEECCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEEECCCEECCCCCHHHHHHH
RFILNGIVLDEHRDVHTVTSNLSLADALDVPRCADVVAPGIGDDPAARARFDAKLYGTPA
HHHHHCEEEECCCCHHHHHCCCCHHHHCCCCHHHHHHCCCCCCCCHHHHEECEEEECCCC
LSRGEPYIVLHPYPMFRYKQWHEDGWVDLVRWARSSGFAVALSGGPAQAERDYAARIARA
CCCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHH
AGEPVLNMTGELSFGESAEMFRHARLFIGPDTGATHVAAACGVPTIALFGPSNPTRWGPW
CCCCCEECCCCCCCCCHHHHHHHEEEEECCCCCCHHHHHHCCCCEEEEECCCCCCCCCCC
PAHWPAGDEPWPLRGSGRRGNVYLLQGEGDCVPCKLEGCDRHLDSWSRCLSELPSARVIG
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCHHHH
VAAAMLGFDAANAPADVATPVDVSRLAARK
HHHHHHHCCCCCCCCCCCCCCCHHHHHCCC
>Mature Secondary Structure 
TLSRPPRTILVSCTRRLGDVLLTTPLVRSLKARWPDAQIDMIVFRGTEGVLEHNPDIRR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHCCCCCEE
VITVAPRARPKERIADALRIWRKYDLACAAISSDRARFYAFFAGRRRIGLVDPGRLTRLT
EEEECCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEEECCCEECCCCCHHHHHHH
RFILNGIVLDEHRDVHTVTSNLSLADALDVPRCADVVAPGIGDDPAARARFDAKLYGTPA
HHHHHCEEEECCCCHHHHHCCCCHHHHCCCCHHHHHHCCCCCCCCHHHHEECEEEECCCC
LSRGEPYIVLHPYPMFRYKQWHEDGWVDLVRWARSSGFAVALSGGPAQAERDYAARIARA
CCCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHH
AGEPVLNMTGELSFGESAEMFRHARLFIGPDTGATHVAAACGVPTIALFGPSNPTRWGPW
CCCCCEECCCCCCCCCHHHHHHHEEEEECCCCCCHHHHHHCCCCEEEEECCCCCCCCCCC
PAHWPAGDEPWPLRGSGRRGNVYLLQGEGDCVPCKLEGCDRHLDSWSRCLSELPSARVIG
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCHHHH
VAAAMLGFDAANAPADVATPVDVSRLAARK
HHHHHHHCCCCCCCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA