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The map label for this gene is regA [H]

Identifier: 126452974

GI number: 126452974

Start: 188663

End: 189205

Strand: Direct

Name: regA [H]

Synonym: BURPS1106A_0199

Alternate gene names: 126452974

Gene position: 188663-189205 (Clockwise)

Preceding gene: 126453480

Following gene: 126451461

Centisome position: 4.73

GC content: 66.3

Gene sequence:

>543_bases
ATGAGCGACAAGAATTTCCTCGTGATCGACGACAACGAAGTGTTTGCCGGCACGCTGGCGCGCGGGCTCGAGCGCCGCGG
CTACGCGGTGCGGCAGGCGCACAACAAGGACGAGGCGCTCAAGCTCGCGGGCGCCGAGAAGTTCGAGTTCATCACCGTCG
ATCTGCACCTCGGCAACGATTCGGGCCTGAGCCTCATCGCGCCGCTGTGCGATCTGCAGCCTGACGCGCGGATCCTCGTG
CTGACCGGCTACGCGAGCATCGCGACCGCGGTGCAGGCGGTGAAGGACGGCGCGGACAACTACCTCGCGAAGCCGGCGAA
CGTCGAATCGATCCTCGCCGCGCTGCAGACGAACGCGAGCGAGGTGCAGGCCGAAGAGGCGCTCGAGAACCCGGTGGTGC
TGTCGGTCGACCGGCTCGAATGGGAGCATATCCAGCGCGTGCTCGCGGAGAACAACAACAACATCTCGGCGACCGCGCGC
GCGCTGAACATGCATCGCCGCACGCTGCAGCGCAAGCTCGCGAAGAAGCCGGTGCGGCAGTAA

Upstream 100 bases:

>100_bases
CAGCCGCGCGGCACGCGGGCGATCCTGCGGCTACCGGTCGCACGTCAGGTGGCGGCCGAGATGGCGAACGAAAACGGATA
GACCAGATGGAGTGATGCAA

Downstream 100 bases:

>100_bases
GGGCGCGCGGCGGACTTCGGGCGGCGCGTGCCTCGGGGCGGCTGCAAGGCCGCCGGTGCGGCGCCCGGCGTTCGCGGGCC
GTGCAAGGCGCGATCGGGGC

Product: Fis family DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVDLHLGNDSGLSLIAPLCDLQPDARILV
LTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQAEEALENPVVLSVDRLEWEHIQRVLAENNNNISATAR
ALNMHRRTLQRKLAKKPVRQ

Sequences:

>Translated_180_residues
MSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVDLHLGNDSGLSLIAPLCDLQPDARILV
LTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQAEEALENPVVLSVDRLEWEHIQRVLAENNNNISATAR
ALNMHRRTLQRKLAKKPVRQ
>Mature_179_residues
SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVDLHLGNDSGLSLIAPLCDLQPDARILVL
TGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQAEEALENPVVLSVDRLEWEHIQRVLAENNNNISATARA
LNMHRRTLQRKLAKKPVRQ

Specific function: Member of the two-component regulatory system regB/regA. Involved in transactivating anaerobic expression of the photosynthetic apparatus. It is a transcriptional regulator that is responsible for activating expression of the puf, puh, and puc operons in

COG id: COG4567

COG function: function code TK; Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1790437, Length=129, Percent_Identity=29.4573643410853, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR002197
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 19768; Mature: 19636

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVDLHLGND
CCCCCEEEEECCCCHHHHHHHHHHHCCHHHHHHCCCCHHEECCCCCCEEEEEEEEEECCC
SGLSLIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNAS
CCHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHCCHH
EVQAEEALENPVVLSVDRLEWEHIQRVLAENNNNISATARALNMHRRTLQRKLAKKPVRQ
HHHHHHHHCCCEEEEEHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVDLHLGND
CCCCEEEEECCCCHHHHHHHHHHHCCHHHHHHCCCCHHEECCCCCCEEEEEEEEEECCC
SGLSLIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNAS
CCHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHCCHH
EVQAEEALENPVVLSVDRLEWEHIQRVLAENNNNISATARALNMHRRTLQRKLAKKPVRQ
HHHHHHHHCCCEEEEEHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA