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The map label for this gene is secD [H]

Identifier: 162329625

GI number: 162329625

Start: 1234849

End: 1236696

Strand: Direct

Name: secD [H]

Synonym: APL_1067

Alternate gene names: 162329625

Gene position: 1234849-1236696 (Clockwise)

Preceding gene: 126208538

Following gene: 126208540

Centisome position: 54.29

GC content: 47.08

Gene sequence:

>1848_bases
GTGTTAAATCGTTTCCCATTATGGAAGAACCTGATGATTATTATTATCGTACTCATCGGGGGCTTATATGCTCTTCCTAA
CCTATACGGCGAAGATCCGTCGGTTCAAATTTCCGGAACCCGCGGTCAGCAAGCGACGAGCGAAACGCTCGTTCAAGTAC
AGGGAACGTTGTCGTCAATGAATATCACCCCGAAATCAGCCGTTCTCGAGAACGGCTCGATTTTAGTGCGTTTAGAAAAA
GATGAACAACAATTACCTGCCAAAGAAAAAATTTCCGAAGTCTTAGGCGATAAATTTTCCGTAGCGTTAAACCTTGCGCC
GGCAACGCCGGCTTGGCTAACCGACATCGGCGGTAACCCGATGAAACGAGGCTTGGACTTACGCGGCGGCGTTCGCTTCC
TGATGGAAGTGGATATGAACACCGCATTGGCTAAACAACAAGAAAATCTACAAGACAGTTTACGTACGGAACTTCGTAAA
GAAAAACTGCAATATAAAGCGGTTAAAAAAGGCGAAAATTTTGCCACGGTAATTGAATTTGCCGATGAGGAAACCGCCAA
TAAAGCCATTCGTTATATTCGTCGCGTTCACACTGCTCTTGAAGCCGCTTCTATTAGCCCGACAGAGATTTCATTCAGCC
CGTCGGAAAGCGGACTCGCCACCTCACGCGATACGGCGATTGAACAAAACTTATCCATCTTACGTAAGCGTGTGGAAGAA
CTCGGCGTGTCGGAGCCGACTATCCAGCGTCAAGGTGCGGATCGTATCGTGGTTGAATTACCGGGTGTGCAAGATACCGC
GCGTGCTAAAGAACTTCTCGGTGCAACAGCAACGCTTGAATTCCGTTTAGTAAATGCGGAAGCCAGCCCAGAATCTGCAG
CCAGAGGTATTGTACCGGCGGATTCCGAAATTCAATATACGCGTGACGGTAATCCCGTCGTGCTACGTCGTAAACCGTCT
TTAGGAGGTGAGCATATTATTGATGCGACTTCCGGTAAAGACGAACGCGGTTTACCGCAAGTAAGCATCAATCTTGATGC
GGAAGGCGGTACGATGATGGCGGATATTACCAAAAGTGCGGTAGGCAAACCGATGGCGACCCTTTACAGCGAGTTTAAAG
ACTCCGGTCGTAAAGACGCTAACGGTAAAGTGATCTTAGAAAAACACGAAGAAGTAATTAACGTCGCAACGATTAACTCT
CGTCTTGGTAGCCAATTCCAAATTACCGGGATCGATTCGCCGGCAGAAGCGCAAAATCTTGCGGTACTGTTACGCTCGGG
TGCATTGATTGCACCGATTGTGATTGTGGAAGAACGTACTATCGGCGCTTCTTTAGGTGCGGATAACGTTGCGAAAGGGA
TGGAAGCCGGTATGTACGGTTTAATCTTAACCATCGCATTCTGTTTAATTTACTACAAAATGTTCGGAGTGTTTGCGGCA
ACGGCTCTGACGGCAAATATGGTGCTGACTATCGGTTTAATGTCATTAATCGGTGCAACACTGACTATGCCGGGAATTGC
CGGTATCGTACTGGCGGTAGGTATGTCGGTCGATGCAAACGTATTGATTTACGAACGTATTAAAGAAGAACTGCGTAACG
GACGATCAATCCAACAAGCGATTCACGAAGGTTATAACGGTGCGTTCACCTCGATTTTCGACTCGAACTTAACCACGATT
TTAACCTCGTTAGTGCTGTATGCGGTCGGTACCGGTCCGGTAAAAGGCTTTGCAATTACGCTTGCACTTGGGGTAATGAT
TTCGATGTTTACCGCAATTACCGGTACTCGTATGCTCGTAAACTGGGTGTACGGCGGCAATAAACGTGTGAAAAAACTTT
GGATTTAA

Upstream 100 bases:

>100_bases
CGACTGAAGTTGTAATTTCTCGTAACTATGTCGTTGCGGTATTACCAAAAGGTCAAATGAAAGCCCTTTCTTAATTTTCC
TATCATTTAGGGGACTAATT

Downstream 100 bases:

>100_bases
GGTGGAATAAATGGCAACTATGCAAAAAGAAAAAGATGCGTCGGAAATCAAGCTGCCGTATAAGCTTATTCCATTTATGA
AATATCGTTATGTCGGTTTC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 615; Mature: 615

Protein sequence:

>615_residues
MLNRFPLWKNLMIIIIVLIGGLYALPNLYGEDPSVQISGTRGQQATSETLVQVQGTLSSMNITPKSAVLENGSILVRLEK
DEQQLPAKEKISEVLGDKFSVALNLAPATPAWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRK
EKLQYKAVKKGENFATVIEFADEETANKAIRYIRRVHTALEAASISPTEISFSPSESGLATSRDTAIEQNLSILRKRVEE
LGVSEPTIQRQGADRIVVELPGVQDTARAKELLGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPS
LGGEHIIDATSGKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEEVINVATINS
RLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKMFGVFAA
TALTANMVLTIGLMSLIGATLTMPGIAGIVLAVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTI
LTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLWI

Sequences:

>Translated_615_residues
MLNRFPLWKNLMIIIIVLIGGLYALPNLYGEDPSVQISGTRGQQATSETLVQVQGTLSSMNITPKSAVLENGSILVRLEK
DEQQLPAKEKISEVLGDKFSVALNLAPATPAWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRK
EKLQYKAVKKGENFATVIEFADEETANKAIRYIRRVHTALEAASISPTEISFSPSESGLATSRDTAIEQNLSILRKRVEE
LGVSEPTIQRQGADRIVVELPGVQDTARAKELLGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPS
LGGEHIIDATSGKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEEVINVATINS
RLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKMFGVFAA
TALTANMVLTIGLMSLIGATLTMPGIAGIVLAVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTI
LTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLWI
>Mature_615_residues
MLNRFPLWKNLMIIIIVLIGGLYALPNLYGEDPSVQISGTRGQQATSETLVQVQGTLSSMNITPKSAVLENGSILVRLEK
DEQQLPAKEKISEVLGDKFSVALNLAPATPAWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRK
EKLQYKAVKKGENFATVIEFADEETANKAIRYIRRVHTALEAASISPTEISFSPSESGLATSRDTAIEQNLSILRKRVEE
LGVSEPTIQRQGADRIVVELPGVQDTARAKELLGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPS
LGGEHIIDATSGKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEEVINVATINS
RLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKMFGVFAA
TALTANMVLTIGLMSLIGATLTMPGIAGIVLAVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTI
LTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLWI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=616, Percent_Identity=58.7662337662338, Blast_Score=742, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66339; Mature: 66339

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNRFPLWKNLMIIIIVLIGGLYALPNLYGEDPSVQISGTRGQQATSETLVQVQGTLSSM
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCHHHC
NITPKSAVLENGSILVRLEKDEQQLPAKEKISEVLGDKFSVALNLAPATPAWLTDIGGNP
CCCCHHHHCCCCCEEEEECCCHHHCCHHHHHHHHHCCCEEEEEEECCCCCHHHHCCCCCH
MKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKLQYKAVKKGENFATVIEF
HHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
ADEETANKAIRYIRRVHTALEAASISPTEISFSPSESGLATSRDTAIEQNLSILRKRVEE
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LGVSEPTIQRQGADRIVVELPGVQDTARAKELLGATATLEFRLVNAEASPESAARGIVPA
CCCCCCCHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEEEECCCCCHHHHCCCCCC
DSEIQYTRDGNPVVLRRKPSLGGEHIIDATSGKDERGLPQVSINLDAEGGTMMADITKSA
CCCEEEECCCCEEEEEECCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCEEEHHHHHHH
VGKPMATLYSEFKDSGRKDANGKVILEKHEEVINVATINSRLGSQFQITGIDSPAEAQNL
HCCHHHHHHHHHHHCCCCCCCCCEEEECCHHHEEEEEEHHHCCCEEEEECCCCCCHHHHH
AVLLRSGALIAPIVIVEERTIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKMFGVFAA
HHHHHCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TALTANMVLTIGLMSLIGATLTMPGIAGIVLAVGMSVDANVLIYERIKEELRNGRSIQQA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHH
IHEGYNGAFTSIFDSNLTTILTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLV
HHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEE
NWVYGGNKRVKKLWI
EEEECCCCCCCEECC
>Mature Secondary Structure
MLNRFPLWKNLMIIIIVLIGGLYALPNLYGEDPSVQISGTRGQQATSETLVQVQGTLSSM
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCHHHC
NITPKSAVLENGSILVRLEKDEQQLPAKEKISEVLGDKFSVALNLAPATPAWLTDIGGNP
CCCCHHHHCCCCCEEEEECCCHHHCCHHHHHHHHHCCCEEEEEEECCCCCHHHHCCCCCH
MKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKLQYKAVKKGENFATVIEF
HHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
ADEETANKAIRYIRRVHTALEAASISPTEISFSPSESGLATSRDTAIEQNLSILRKRVEE
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LGVSEPTIQRQGADRIVVELPGVQDTARAKELLGATATLEFRLVNAEASPESAARGIVPA
CCCCCCCHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEEEECCCCCHHHHCCCCCC
DSEIQYTRDGNPVVLRRKPSLGGEHIIDATSGKDERGLPQVSINLDAEGGTMMADITKSA
CCCEEEECCCCEEEEEECCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCEEEHHHHHHH
VGKPMATLYSEFKDSGRKDANGKVILEKHEEVINVATINSRLGSQFQITGIDSPAEAQNL
HCCHHHHHHHHHHHCCCCCCCCCEEEECCHHHEEEEEEHHHCCCEEEEECCCCCCHHHHH
AVLLRSGALIAPIVIVEERTIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKMFGVFAA
HHHHHCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TALTANMVLTIGLMSLIGATLTMPGIAGIVLAVGMSVDANVLIYERIKEELRNGRSIQQA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHH
IHEGYNGAFTSIFDSNLTTILTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLV
HHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEE
NWVYGGNKRVKKLWI
EEEECCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]